Data · collection · 2017
Whole Genome of OP9 Lineage
Listed in NASA Earthdata CMR
Members of candidate phylum OP9 are found in geothermal systems, petroleum reservoirs, anaerobic digesters, wastewater treatment facilities, and marine sediments.
Description
In this study, 8 single-cell genomes (SCGs) of OP9, which was predominant composing 26.7% in the marine sediments of the Ross Sea, Antarctica was obtained through single-cell sequencing. Eight SCGs showed high 16S rRNA gene identity (>99.3%) each other while they had low 16S rRNA gene similarities ( -Yet, little information regarding their metabolic capabilities and ecological role within such habitats is currently available due to the lack of cultured isolates. -As a first study on the OP9 genome from Antarctic marine sediment, more detailed analyses will provide the glimpse into the lifestyle of a member of widely distributed, yet poorly understood bacterial candidate division OP9.
Links
Documentation and papers
- PROJECT HOME PAGE kpdc.kopri.re.kr ↗
project · from NASA CMR
Catalogue records · 2
- CMR record cmr.earthdata.nasa.gov/search/concepts/C2244297737-AMD_KOPRI.html ↗
catalogue entry · from NASA CMR
- CMR UMM-JSON cmr.earthdata.nasa.gov/search/concepts/C2244297737-AMD_KOPRI.umm_json ↗
metadata API · from NASA CMR
Topics
- Stated by source
- Cyanobacteria (Blue-Green Algae) · NOT APPLICABLE · NOT APPLICABLE
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NASA Earthdata CMR | C2244297737-AMD_KOPRI | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[instrument].gcmd_instrument:not-applicable | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science/biological-classification/bacteria-archaea/cyanobacteria-blue-green-algae | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · NASA CMR | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[platform].gcmd_platform:not-applicable | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| created_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| description | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/Abstract |
| publication_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| spatial | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/SpatialExtent |
| title | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/EntryTitle |
| updated_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| version_label | source · NASA CMR | connector:nasa_cmr@1.0.0 |