Omics · study · 2026
Structural Basis of a Novel Heme Binding Bacterial One-Component Switch
Listed in NCBI GEO
One-component systems (OCSs) integrate sensory and effector functions within a single protein, enabling rapid gene expression changes in response to environmental cues.
Description
Here, we characterized FG214, a heme binding OCS transcription factor from Fimbriimonas ginsengisoli. The Per-ARNT-Sim (PAS) domain of FG214 binds a hexacoordinate heme b in oxidized conditions and undergoes redox and ligand-dependent conformational changes, transitioning from a monomeric state to an active homodimer.
Spectroscopic and structural data reveal that oxidation stabilizes the Helix-Turn-Helix (HTH)-PAS intramolecular domain interface, while reduction of the heme iron promotes HTH dissociation. Furthermore, addition of imidazole as a ferric heme ligand drives homodimerization and DNA binding. A 1.47 Å crystal structure of an imidazole-bound truncated construct captured an activated dimer, revealing heme coordination sites and homodimerization interfaces.
Read the rest (1 more)
Using DNA-binding assays, we identified an artificial promoter sequence and demonstrated ligand-enhanced protein-DNA binding. Additionally, we performed proof of concept experiments to showcase the ability of FG214 to homodimerize in vivo, setting the stage for a redox or gas sensitive biosensor. Together, these findings define FG214 as a novel heme-binding PAS transcription factor and establish a model for a redox-regulated molecular switches.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE319nnn/GSE319048 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319048 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1422027 ncbi.nlm.nih.gov/bioproject/PRJNA1422027 ↗
project · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by array
- From keywords
- Life Sciences
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE319048 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-array | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |