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Data · dataset · 2020

Updated results to publication “Estimation of Recombination Rate and Maternal Linkage Disequilibrium in Half-Sibs” (Fron Genet)

Listed in RADAR and RADAR4Memory — shown once because both records carry DOI 10.22000/280

In Hampel et al. (2018, Fron Genet), we proposed an advanced method for the estimation of paternal recombination rate and maternal linkage disequilibrium between pairs of SNPs if genotypes of paternal half sibs were available.

Description

To show practical usability of the approach, empirical bovine data comprising several half-sib families have been investigated. However, the outcome of our method strongly depended on the order of SNPs.

For instance, candidates of putatively misplaced SNPs were identified if recombination rate between close SNPs was unusually high. Since the bovine genome assembly has been updated to its current version ARS-UCD1.2, it was necessary to re-analyse the data. The parameter estimates as well as the input data are now jointly available from this repository.

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More details about the methodology can be found in Hampel et al. (2018, Fron Genet), doi.org/10.3389/fgene.2018.00186.

Links

Where it is published

Catalogue records · 1

Topics

Provenance · 2 source records, 11 field assertions
SourceKeyLast seenRaw
RADAR10.22000/28010 d agoJSON v1
RADAR4Memory10.22000/28010 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · radar service eu deconnector:radar_service_eu_de@1.0.0
concepts[field].anzsrc:group:3105mapping · radar4memory radar service euvocabulary-mapper@1.0.0keywords['Genetics']
concepts[field].anzsrc:group:3105mapping · radar service eu devocabulary-mapper@1.0.0keywords['Genetics']
concepts[field].local:field:earth-environmentalmapping · radar service eu deconnector:radar_service_eu_de@1.0.0
concepts[field].local:field:earth-environmentalmapping · radar4memory radar service euconnector:radar4memory_radar_service_eu@1.0.0
concepts[field].local:field:life-sciencesmapping · radar service eu deconnector:radar_service_eu_de@1.0.0
concepts[field].local:field:life-sciencesmapping · radar4memory radar service euconnector:radar4memory_radar_service_eu@1.0.0
descriptionsource · radar service eu deconnector:radar_service_eu_de@1.0.0/metadata/dc/description
licensesource · radar service eu deconnector:radar_service_eu_de@1.0.0/metadata/dc/rights
publication_datesource · radar service eu deconnector:radar_service_eu_de@1.0.0
titlesource · radar service eu deconnector:radar_service_eu_de@1.0.0/metadata/dc/title