Overcoming detection lag in a cryptic panzootic: chytrid invasion linked to historically enigmatic amphibian declines in the Brazilian Atlantic Forest

This file is necessary and sufficient to run files [code1...] through [code5...]</li><li>[code1...] contains an R markdown file to summarize the dataset (e.g. count samples by year, sample type, etc.)</li><li>[code2...] contains an R markdown file to summarize, model, and plot DNA quality metrics through time</li><li>[code3...] contains an R markdown file to summarize, model, and plot Bd infection status (as estimated by qPCR) through time</li><li>[code4...] contains an R markdown file to summarize, model, and plot Bd infection status (as estimated by histopathology) through time</li><li>[code5...] contains an R markdown file to summarize and plot Bd genotyping and consensus lineage calls through time</li></ul><p></p>