Data · dataset · 2025
Comparative Transcriptome Analysis of Wild-Type and Metabolically Engineered Pichia pastoris (Komagataella phaffii) for β-Lactam Precursor δ-(L-α-aminoadipyl)-L-cysteinyl-D-valine (ACV) Production
Listed in Teesside University Research Data Repository
Description
This dataset "Comparative Transcriptome Analysis of Wild-Type and Metabolically Engineered Pichia pastoris (Komagataella phaffii) for β-Lactam Precursor ACV Production" supports the manuscript titled “Metabolic Engineering of Pichia pastoris for Production of the β-Lactam Precursor δ-(L-α-aminoadipyl)-L-cysteinyl-D-valine (ACV)”. It includes raw transcriptomic data (RNA-Seq FASTQ files) and the results of Differential Gene Expression (DEG) analysis comparing a wild-type strain of Pichia pastoris (also known as Komagataella phaffii) with a genome engineered strain designed to produce the β-Lactam precursor δ-(L-α-aminoadipyl)-L-cysteinyl-D-valine (ACV).
Two biological replicates were analyzed via RNA-Seq for each condition (wild-type and engineered). The dataset contains: 1. Raw sequencing reads (FASTQ]). 2.
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Processed DEG analysis results (tables in CSV format) including gene identifiers, log2 fold changes, p-values, and adjusted p-values (FDR). Pichia pastoris is a widely used host for heterologous protein and metabolite production. This transcriptomic data provides insights into the global gene expression changes resulting from the metabolic engineering strategies employed for ACV synthesis.
Links
Where it is published
- DOI doi.org/10.17632/8pkk8y3xht.1 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science · Synthetic biology
- Inferred from text
- RNA sequencing 65% · Sequencing 75%
Provenance · 1 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/8pkk8y3xht.1 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].anzsrc:field:310113 | mapping · researchdata tees ac uk | vocabulary-mapper@1.0.0 | keywords['Synthetic Biology'] |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |