Data · dataset · 2025
The BalticMAG catalog
Listed in Researchdata.se
This is a comprehensive catalog of species-cluster representative genomes.
Description
To make this catalog, we generated 527 metagenome-assembled genomes (MAGs) from 204 microbial model communities. Moreover, we binned 305 MAGs from the metagenomes corresponding to the samples from which we established the microbial model communities.
To make the genomic catalog comprehensive, we added 771 MAGs from the publicly available metagenomes collected from the Baltic Sea (Alneberg et al., 2018, 2020). Altogether, the 1603 MAGs were dereplicated into 701 species-clusters (average nucleotide identity - ANI ≥ 95%), which form the Baltic Sea genomic catalog (BalticMAG catalog). In this Figshare, we share all 701 species-cluster representative genomes.
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Moreover, you will find a table with metadata for the genomes.
Links
Where it is published
- DOI doi.org/10.17044/scilifelab.28746086 ↗
DOI / persistent id · from researchdata se
Catalogue records · 1
- OAI-PMH record api.researchdata.se/oai-pmh?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3A… ↗
metadata API · from researchdata se
Topics
- From keywords
- Earth & Environmental Science · Life Sciences · Medicine & Health
- Inferred from text
- Tabular 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Researchdata.se | oai:researchdata.se:doi-10-17044-scilifelab-28746086/0 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].local:field:earth-environmental | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[modality].local:modality:tabular | enrichment · researchdata se | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · researchdata se | connector:researchdata_se@1.0.0 | /metadata/dc/description |
| license_text | source · researchdata se | connector:researchdata_se@1.0.0 | |
| publication_date | source · researchdata se | connector:researchdata_se@1.0.0 | |
| title | source · researchdata se | connector:researchdata_se@1.0.0 | /metadata/dc/title |