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Data · dataset · 2024

184 mandarin genotype data

Listed in Teesside University Research Data Repository

Description

The GBS sequencing of 240 mandarin samples produced 96.3 Gb of high quality se-quence data (Q20≥93.78%, Q30≥85.19%), the GC distribution was normal, and the average comparison rate between the population sample and the reference genome of Clementina was 93.79%. After filtering at a 4× sequencing depth, miss 0.2, and a minor allele frequency (MAF) > 0.01, 114,200 high-quality SNPs were obtained. Then, 112,768 high-quality SNPs of 184 mandarins were extracted from the simplified ge-nomes of 240 mandarins (reference genome: ncbi.nlm.nih.gov/datasets/genome/GCF_000493195.1_Citrus_clementina_v1.0) by PLINK1.9 software.

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Where it is published

Catalogue records · 1

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Inferred from text
Sequencing 75%
Provenance · 1 source records, 7 field assertions
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Teesside University Research Data Repositoryoai:data.mendeley.com/s2sg3ktm48.117 h agoJSON v1
FieldAssertionExtractorEvidence
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concepts[field].local:field:earth-environmentalmapping · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0
concepts[modality].local:modality:sequencingenrichment · researchdata tees ac ukkeyword-concept-rules@1.0.0title+description (75%)
descriptionsource · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0/metadata/dc/description
licensesource · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0/metadata/dc/rights
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