Data · dataset · 2024
184 mandarin genotype data
Listed in Teesside University Research Data Repository
Description
The GBS sequencing of 240 mandarin samples produced 96.3 Gb of high quality se-quence data (Q20≥93.78%, Q30≥85.19%), the GC distribution was normal, and the average comparison rate between the population sample and the reference genome of Clementina was 93.79%. After filtering at a 4× sequencing depth, miss 0.2, and a minor allele frequency (MAF) > 0.01, 114,200 high-quality SNPs were obtained. Then, 112,768 high-quality SNPs of 184 mandarins were extracted from the simplified ge-nomes of 240 mandarins (reference genome: ncbi.nlm.nih.gov/datasets/genome/GCF_000493195.1_Citrus_clementina_v1.0) by PLINK1.9 software.
Links
Where it is published
- DOI doi.org/10.17632/s2sg3ktm48.1 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/s2sg3ktm48.1 | 17 h ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |