Data · dataset
[SAG AT50-08 Data] - Genomic data collected from R/V Atlantis cruise AT50-08 in the Eastern Tropical North Pacific during February-March 2023 (Collaborative Research: Key Microbial Processes in Oxygen Minimum Zones: From In Situ Community Rate Measurements to Single Cells)
Listed in Biological and Chemical Oceanography Data Management Office (BCO-DMO) ERDDAP
This dataset corresponds to the raw sequences of the single-cell amplified genomes (SAGs) collected for the MicroPro project in the Eastern Tropical North Pacific oxygen minimum zone in February and March of 2023 aboard R/V Atlantis on cruise AT50-08B.
Description
It includes genome identifiers and associated metadata (e.g., sample IDs, collection context) and links each genome to its corresponding accession in the National Center for Biotechnology Information's Short Read Archive (NCBI SRA).
Links
Where it is published
- ERDDAP dataset info erddap.bco-dmo.org/erddap/info/bcodmo_dataset_999321_v1/index.html ↗
landing page · from erddap bco dmo org
Documentation and papers
- Dataset documentation osprey.bco-dmo.org/dataset/999321 ↗
documentation · from erddap bco dmo org
Catalogue records · 1
- ERDDAP tabledap access form erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_999321_v1.html ↗
metadata API · from erddap bco dmo org
Topics
- From keywords
- Ocean & Atmospheric Science
- Inferred from text
- Genome sequencing 65%
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Biological and Chemical Oceanography Data Management Office (BCO-DMO) ERDDAP | bcodmo_dataset_999321_v1 | 16 h ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | |
| concepts[modality].local:modality:genome-sequencing | enrichment · erddap bco dmo org | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | /summary |
| spatial | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | |
| title | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | /title |