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Data · dataset · 2026

JCVI-syn3B FtsZ:mCherry plasmid

Listed in Teesside University Research Data Repository

This plasmid was used for genetic introduction of a second copy of the FtsZ gene fused with mCherry to JCBI-syn3B for fluorescent imaging of cell division.

Description

Gibson assembly was used to construct the plasmid. Syn1.0 (GeneBank accession number CP002027) served as the template to amplify fragment 1 using primers 5’-GAATTCGCCAGAACCAGCAGCGGAGCCAGCGGATCCTTTTAAAAATGTCGGAAAGTCATC-3’ and 5’-AGCAAAGTGGGTGATAAATAAATGACAAACGAATTTAAACAAATAGC-3’, and fragment 2 using primers 5’-CGTTTGTCATTTATTTATCACCCACTTTG-3’ and 5’-ATTTGAACGTTGCGAAGCAACAGAAGCATAATAACAATTATTAAT-3’.

The vector backbone was amplified using primers 5’-AAGGATCCGCTGGCTCCGCTGCTGGTTCTGGCGAATTCATGGTATCAAAAGGAGAAGAAGATAATATG-3’ and 5’-TAATTGTTATTATGCTTCTGTTGCTTCGCAACGTTCAAATC-3’, with the ptxB-FLAG plasmid (not published) as the template. PrimeSTAR Max DNA polymerase (Takara, #R045A) was used to amplify the fragments. PCR was performed with an initial denaturation at 98 °C for 3 minutes, followed by 30 cycles of 98 °C for 10 seconds, 55 °C for 10 seconds, and 72 °C for 1 minute, with a final extension at 72 °C for 5 minutes.

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Primers 5’-TCCTCCAGCTCCTAATCCTT-3’ and 5’-TGTTTGTCGGTGAACGCTCT-3’ were used for colony PCR to identify positive clones. The final plasmid was confirmed by sequencing.

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Where it is published

Catalogue records · 1

Topics

Inferred from text
Imaging 75% · Sequencing 75%
Provenance · 1 source records, 8 field assertions
SourceKeyLast seenRaw
Teesside University Research Data Repositoryoai:data.mendeley.com/x59cx6ns2h.218 h agoJSON v1
FieldAssertionExtractorEvidence
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concepts[field].local:field:earth-environmentalmapping · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0
concepts[modality].local:modality:imagingenrichment · researchdata tees ac ukkeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:sequencingenrichment · researchdata tees ac ukkeyword-concept-rules@1.0.0title+description (75%)
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publication_datesource · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0
titlesource · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0/metadata/dc/title