Table · dataset · 2026
Genetic and ecological architecture of life cycle transitions in the kelp Laminaria pallida
Listed in Edmond
Description of the data and file structure Many organisms alternate between distinct life stages and can reproduce either sexually or asexually, yet the mechanisms coordinating these developmental and reproductive transitions remain poorly understood.
Description
Here, we investigate the molecular basis of life stage identity and reproductive mode in the kelp Laminaria pallida, a multicellular organism with a complex life cycle. By combining gene expression analyses with developmental experiments and natural population-level approaches, we identify the genetic networks that govern developmental state transitions in both sexual and asexual contexts.
Files and variables File: Growth.xlsx Description: Area measurements of Laminaria pallida sporophytes obtained by parthenogenesis and sexual reproduction. Variables • strain: single strain or cross identifier • date: date of the measurement in yyymmdd format • area_mm2: area of individual sporophytes File: Exclusion_counts.xlsx Description: Developmental experiment on Laminaria pallida gametophytes to identify whether mate presence has an influence on parthenogenetic reproduction.
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Variables • replicate: individual ID for each petri dish • strain: strain or cross identifier • mate: absence or presence of mate of the opposite sex in the medium • day: timepoint of the measurement • fields: fields of view counted • area_cm2: area conted based on fields of view • total_gam: absolute number of gametophytes counted • gam_cm2: density of gametophytes / cm2 • m_veg: number of vegetative male gametophytes • m_mat: number of reproductive male gametophytes • m_tra: number of male transition phenotypes • m_pSP_abs: number of male parthenosporophytes • f_veg: number of vegetative female gametophytes • f_mat: number of reproductive female gametophytes • f_egg: number of female gametophytes with released eggs • f_pSP_abs: number of female parthenosporophytes • all_pSP_abs: number of all parthenosporophytes • eggs_abs: absolute number of released eggs File: Timecourse_counts.xlsx Description: Developmental experiment on Laminaria pallida gametophytes to quantify parthenogenetic reproduction.
Variables • replicate: individual ID for each petri dish • strain: strain or cross identifier • setup: single strain or cross of male and female • day: timepoint of the measurement • fields: fields of view counted • area_cm2: area conted based on fields of view • total_gam: absolute number of gametophytes counted • gam_cm2: density of gametophytes / cm2 • m_veg: number of vegetative male gametophytes • m_mat: number of reproductive male gametophytes • m_tra: number of male transition phenotypes • f_veg: number of vegetative female gametophytes • f_mat: number of reproductive female gametophytes • f_egg: number of female gametophytes with released eggs • f_sporo: number of female gametophtes with attached sporophytes • sporo_abs: absolute number of (partheno-)sporophytes File: Microsat_GenAlEx.xlsx Description: Microsatellite genotypes of Laminaria pallida sporophytes collected in Paternoster, South Africa (ZAF) and Swakopmund, Namibia (NAM) in GenAlEx format.
Variables • Individual: individual ID for each sporophyte • Quadrat: Quadrat within each population where sample was taken • CN766672_tri: microsatellite marker with two allele values • Ld_25_penta: microsatellite marker with two allele values • Ld_67_tri: microsatellite marker with two allele values • Lo_15_tri: microsatellite marker with two allele values • Lo_24_tri: microsatellite marker with two allele values • Lo_26_tetra: microsatellite marker with two allele values • Lo_27_tetra: microsatellite marker with two allele values • Lo_28_tetra: microsatellite marker with two allele values • Lo5-8_tri: microsatellite marker with two allele values File: S1_raw_images.tif Description: Annotated raw image file of agarose gel of PCR products with amplified products of sex-specific PCR markers for each Laminaria pallida gametophyte strain and offspring sporophyte lineage used in this study.
Links
Where it is published
- Dataverse dataset page edmond.mpg.de/dataset.xhtml?persistentId=doi%3A10.17617%2F3.36JFOY ↗
landing page · from edmond mpg de
- DOI doi.org/10.17617/3.36jfoy ↗
DOI / persistent id · from edmond mpg de
Catalogue records · 1
- Dataverse API edmond.mpg.de/api/datasets/:persistentId/?persistentId=doi%3A10.17617%2F3.36… ↗
metadata API · from edmond mpg de
Topics
- Stated by source
- Biology
- From keywords
- Astronomy & Astrophysics · Chemistry · Computer Science & AI · Earth & Environmental Science · Economics & Finance · Engineering · Humanities · Life Sciences · Materials Science · Medicine & Health · Ocean & Atmospheric Science · Physics · Social Science
- Inferred from text
- Evolution of developmental systems 76% · Image 75%
Provenance · 1 source records, 22 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Edmond | doi:10.17617/3.36JFOY | 3 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:field:310404 | enrichment · edmond mpg de | taxonomy-embedding@1.0.0 | title+keywords+description (76%) |
| concepts[field].dataverse_subject:biology | source · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:astronomy | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:chemistry | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:computer-science-ai | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:earth-environmental | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:economics-finance | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:engineering | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:humanities | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:materials-science | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:ocean-atmospheric | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:physics | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:social-science | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[modality].local:modality:image | enrichment · edmond mpg de | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · edmond mpg de | connector:edmond_mpg_de@1.0.0 | |
| description | source · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /description |
| publication_date | source · edmond mpg de | connector:edmond_mpg_de@1.0.0 | |
| title | source · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /name |
| updated_date | source · edmond mpg de | connector:edmond_mpg_de@1.0.0 | |
| version_label | source · edmond mpg de | connector:edmond_mpg_de@1.0.0 |