Omics · study · 2026
Ectopic expression of the transcriptional regulator and m6A writer complex member HIZ1 impacts development
Listed in NCBI GEO
The Arabidopsis protein, HAKAI-interacting zinc finger protein 1 (HIZ1), is suggested as both a transcriptional regulator, and a component of the N6-methyladenosine (m6A) writer complex that methylates certain adenosines within mRNA.
Description
Unlike other components of this complex, HIZ1 is not expressed constitutively throughout the plant, is not required for m6A deposition, and when ectopically overexpressed results in reduced levels of m6A.
However, the biological functions of HIZ1 remain unclear. Here, we generated additional HIZ1 constitutive overexpression (HIZ1 OX) lines and selected eight lines, showing varying levels of expression. These plants exhibit pleiotropic developmental defects, the severity of which correlates to expression level.
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However, higher levels of HIZ1 overexpression did not reduce m6A levels beyond a 25% decrease, consistent with the complete titration of methylase complex interacting partner(s). Using chromatin immunoprecipitation sequencing, we show that HIZ1 is predominantly associated with predicted gene promoter regions and is significantly enriched on genes whose transcripts are m6A modified. Our results suggest that constitutive overexpression of HIZ1 promotes vegetative growth and also disrupts reproductive growth in Arabidopsis.
This likely occurs both through m6A inhibition and transcriptional regulations. Thus, HIZ1 may function in an analogous fashion to mouse zinc finger protein 217 (ZFP217, human homolog ZNF217), which acts as both a transcriptional regulator and a suppressor of the m6A methylation complex.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE303nnn/GSE303992 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE303992 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1298597 ncbi.nlm.nih.gov/bioproject/PRJNA1298597 ↗
project · from NCBI GEO
Topics
- Stated by source
- Arabidopsis thaliana · Genome binding/occupancy profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE303992 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:3702 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |