Data · dataset · 2026
Containerised programs used in "Combining Annotation Software to Identify Orthologous genes (CASIO) provides a new dataset of orthologous genes for swallowtail butterflies"
Listed in data.InDoRES
Description
These are Singularity containers used in the Snakemake pipeline CASIO: Combining Annotation Software to Identify Orthologous genes. This pipeline is described in the manuscript “Combining Annotation Software to Identify Orthologous Genes (CASIO) Provides a New Dataset of Orthologous Genes for Swallowtail Butterflies” by Vigo et al. (2025). The Snakemake workflow and instructions for its use are available at : github.com/Gwenaelle-Vigo/CASIO.
The containers are called directly by CASIO and are automatically downloaded by the installation script provided in the GitHub repository. Please read the full documentation on how to use CASIO here: github.com/Gwenaelle-Vigo/CASIO. repeatM.sif : contains RepeatModeler 2.0.7, RepeatMasker 4.2.0 and BRAKER2 Busco.sif : BISCO 5.8.2 miniprot_scipio.sif : Miniprot 0.13, Scipio 1.4 cleaning_orthology.sif : see github.com/Gwenaelle-Vigo/CASIO
Links
Where it is published
- Dataverse dataset page data.indores.fr/dataset.xhtml?persistentId=doi%3A10.48579%2FPRO%2FREP93J ↗
landing page · from data indores fr
- DOI doi.org/10.48579/pro/rep93j ↗
DOI / persistent id · from data indores fr
Catalogue records · 1
- Dataverse API data.indores.fr/api/datasets/:persistentId/?persistentId=doi%3A10.48579%2FPRO%… ↗
metadata API · from data indores fr
Topics
- Stated by source
- Earth and Environmental Sciences
- From keywords
- Earth & Environmental Science · Life Sciences · Medicine & Health
- Inferred from text
- Evolutionary biology 74%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| data.InDoRES | doi:10.48579/PRO/REP93J | 7 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3104 | enrichment · data indores fr | taxonomy-embedding@1.0.0 | title+keywords+description (74%) |
| concepts[field].dataverse_subject:earth-and-environmental-sciences | source · data indores fr | connector:data_indores_fr@1.0.0 | /subjects |
| concepts[field].local:field:earth-environmental | mapping · data indores fr | connector:data_indores_fr@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · data indores fr | connector:data_indores_fr@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · data indores fr | connector:data_indores_fr@1.0.0 | /subjects |
| created_date | source · data indores fr | connector:data_indores_fr@1.0.0 | |
| description | source · data indores fr | connector:data_indores_fr@1.0.0 | /description |
| publication_date | source · data indores fr | connector:data_indores_fr@1.0.0 | |
| title | source · data indores fr | connector:data_indores_fr@1.0.0 | /name |
| updated_date | source · data indores fr | connector:data_indores_fr@1.0.0 | |
| version_label | source · data indores fr | connector:data_indores_fr@1.0.0 |