Data · dataset · 2023
Atomic-level structure determination of amorphous molecular solids by NMR
Listed in Materials Cloud Archive
Structure determination of amorphous materials remains challenging, owing to the disorder inherent to these materials.
Description
Nuclear magnetic resonance (NMR) powder crystallography is a powerful method to determine the structure of molecular solids, but disorder leads to both a high degree of overlap between measured signals, resulting in challenges for spectral assignment, and prevents the unambiguous identification of a single modelled periodic structure as representative of the whole material.
Here, we determine the atomic-level ensemble structure of the amorphous form of the drug AZD4625 by combining solid-state NMR experiments with molecular dynamics (MD) simulations and machine-learned chemical shifts. By considering the combined shifts of all 1H and 13C atomic sites in the molecule, we determine the structure of the amorphous form by identifying an ensemble of local molecular environments that are in agreement with experiment.
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We then extract preferred conformations and intermolecular interactions in the amorphous sample, and analyze the structure in terms of the hydrogen bonding and conformational factors that stabilize the amorphous form of the drug.
Links
Where it is published
- Materials Cloud Archive record archive.materialscloud.org/records/5pdz3-vsq42 ↗
landing page · from archive materialscloud org
- DOI doi.org/10.24435/materialscloud:gk-51 ↗
DOI / persistent id · from archive materialscloud org
Catalogue records · 1
- InvenioRDM API archive.materialscloud.org/api/records/5pdz3-vsq42 ↗
metadata API · from archive materialscloud org
Topics
- Stated by source
- Amorphous solids · Machine-learning · MARVEL/DD1 · molecular dynamics simulation · NMR · structure determination
- From keywords
- Computer Science & AI · Life Sciences · Machine learning
- Inferred from text
- Magnetic resonance imaging 65%
Provenance · 1 source records, 16 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Materials Cloud Archive | 5pdz3-vsq42 | 2 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · archive materialscloud org | connector:archive_materialscloud_org@1.0.0 | |
| concepts[field].anzsrc:group:4611 | mapping · archive materialscloud org | vocabulary-mapper@1.0.0 | keywords['machine learning'] |
| concepts[field].local:field:computer-science-ai | mapping · archive materialscloud org | connector:archive_materialscloud_org@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · archive materialscloud org | connector:archive_materialscloud_org@1.0.0 | |
| concepts[modality].local:modality:mri | enrichment · archive materialscloud org | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[topic].invenio_subject:archive_materialscloud_org:amorphous-solids | source · archive materialscloud org | connector:archive_materialscloud_org@1.0.0 | |
| concepts[topic].invenio_subject:archive_materialscloud_org:machine-learning | source · archive materialscloud org | connector:archive_materialscloud_org@1.0.0 | |
| concepts[topic].invenio_subject:archive_materialscloud_org:marvel-dd1 | source · archive materialscloud org | connector:archive_materialscloud_org@1.0.0 | |
| concepts[topic].invenio_subject:archive_materialscloud_org:molecular-dynamics-simulation | source · archive materialscloud org | connector:archive_materialscloud_org@1.0.0 | |
| concepts[topic].invenio_subject:archive_materialscloud_org:nmr | source · archive materialscloud org | connector:archive_materialscloud_org@1.0.0 | |
| concepts[topic].invenio_subject:archive_materialscloud_org:structure-determination | source · archive materialscloud org | connector:archive_materialscloud_org@1.0.0 | |
| description | source · archive materialscloud org | connector:archive_materialscloud_org@1.0.0 | /metadata/description |
| license | source · archive materialscloud org | connector:archive_materialscloud_org@1.0.0 | |
| publication_date | source · archive materialscloud org | connector:archive_materialscloud_org@1.0.0 | |
| title | source · archive materialscloud org | connector:archive_materialscloud_org@1.0.0 | /metadata/title |
| updated_date | source · archive materialscloud org | connector:archive_materialscloud_org@1.0.0 |