Data · dataset · 2026
Data related to the DeepPlantTE article
Listed in ScienceDB
This dataset is associated with the manuscript “DeepPlantTE: a dedicated classification model for plant transposons” (manuscript ID: 20260299), submitted to Progress in Biochemistry and Biophysics.
Description
It contains plant transposon sequences from InpactorDB and MnTEdb, which were used as independent test datasets to evaluate the classification performance and generalization ability of DeepPlantTE. Neither dataset was used for model training.
The InpactorDB test set contains 130,439 sequences from two classes, LTR/Copia and LTR/Gypsy. Because the range of classes represented in InpactorDB is relatively limited, we additionally used a subset of MnTEdb for supplementary testing. This subset comprises 4,077 sequences from five classes: LTR/Copia, LTR/Gypsy, DNA/TcMar, DNA/hAT, and LINE/L1.
Read the rest (1 more)
Testing on independent datasets from different sources and with different class compositions provides complementary evidence for assessing the model’s ability to classify plant transposon sequences and its generalization performance.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.013tx ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.013tx | 9 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |