Omics · study · 2026
Programming effects of removing maternal heat abatement on offspring growth, immunity, thermotolerance, and liver transcriptomics during backgrounding
Listed in NCBI GEO
This study used transcriptomic profiling to investigate hepatic gene expression differences in Angus-cross calves for a 112-day background period during the summer.
Description
Calves were born from cows given (S) or not given access (N) to shade during gestation. Liver biopsies were performed on d 56 on calves randomly selected, which were subjected to RNA-Seq analysis, yielding 02 differentially expressed genes (DEGs) (FDR < 0.1) due to the main effect of treatment (No shade vs. Shade; N vs. S).
Within sex, we identified nine genes differentialy expressed in females. No DEGs were observed in males due to the treatment. Likewse, no interaction between sex and treatment was identified.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE318nnn/GSE318541 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE318541 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1419204 ncbi.nlm.nih.gov/bioproject/PRJNA1419204 ↗
project · from NCBI GEO
- PubMed 42290787 pubmed.ncbi.nlm.nih.gov/42290787 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE318541 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |