Table · dataset · 2026
MPDB: a multi-kingdom reference database for the identification of maize (Zea mays L.) associated pathogens
Listed in figshare
<p dir="ltr">MaizePathogenDB (MPDB) is a manually curated multi-kingdom reference database for the molecular identification of maize (Zea mays L.) associated pathogens, covering bacteria, fungi, oomycetes, and viruses.
Description
This marker-clean release contains 6,114 reference sequences: 392 bacterial 16S rRNA sequences, 4,500 fungal ITS sequences, 792 oomycete ITS sequences, and 430 viral genome or genome-segment sequences. Ten bacterial false positives representing 16S rRNA methylase or methyltransferase genes were removed.
Fungal and oomycete records were reduced to ITS1-5.8S-ITS2 with ITSx, and bacterial records were reduced to 16S rRNA regions with Barrnap. Nine fungal records without a reliable pure ITS interval were excluded; no catalog entry lost all reference sequences. The package includes sequences, prebuilt BLAST databases, taxonomy, the standalone web platform, sequence and validation data, curation records, analysis code, README, LICENSE, and CHECKSUMS.
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Rendered manuscript figures and figure-generation code are intentionally not included. License: CC BY 4.0.</p>
Links
Where it is published
- DOI doi.org/10.6084/m9.figshare.33415123.v5 ↗
DOI / persistent id · from figshare com
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from figshare com
Topics
- From keywords
- Astronomy & Astrophysics · Chemistry · Computational ecology and phylogenetics · Computer Science & AI · Earth & Environmental Science · Economics & Finance · Engineering · Humanities · Life Sciences · Medicine & Health · Microbial ecology · Ocean & Atmospheric Science · Plant and fungus systematics and taxonomy · Plant pathology · Social Science
Provenance · 1 source records, 20 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| figshare | oai:figshare.com:article/33415123 | 6 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].anzsrc:field:310203 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Computational ecology and phylogenetics'] |
| concepts[field].anzsrc:field:310411 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Plant and fungus systematics and taxonomy'] |
| concepts[field].anzsrc:field:310703 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Microbial ecology'] |
| concepts[field].anzsrc:field:310805 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Plant pathology'] |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| description | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/description |
| license | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/rights |
| publication_date | source · figshare com | connector:figshare_com@1.0.0 | |
| title | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/title |