Data · dataset · 2024
RNA seq data for flia and flk1 cells sorted from zebrafish embryos treated with BF170
Listed in ScienceDB
20 hpf and 28 hpf embryos treated with DMSO and BF170 treatment were collected and fli1a-GFP and flk1-mCherry positive cells were sorted out into SMART-SeqTM V4 kit lysis buffer containing RNase inhibitor.
Description
All samples were amplified to obtain cDNA product by using Smart Seq2 method, and the concentrations of amplified products were measured by Qubit 3.0 Flurometer. For library construction, cDNA samples were firstly fragmented to approximately 350 bp by Bioruptor Sonication System.
The fragments were subjected to end repair, addition of A base and adaptor ligation, and then purified using Beckman A mpure XP beads. The libraries were run on Illumina HiSeq platform by double-end sequencing program. Bioinformatics analysis was performed based on GRCz10.88 zebrafish reference genome.
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Differential expression analysis was conducted using DEGSeq. DEGs were used for GO and KEGG functional analysis.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.agriculture.00027 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Biochemistry and cell biology 68% · Sequencing 75%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.agriculture.00027 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].anzsrc:group:3101 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (68%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |