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Data · dataset · 2021

Exploration type of ectomycorrhizas assigned by identity of amplicon sequence variant

Listed in Borealis and Agri-environmental Research Data Dataverse — shown once because both records carry DOI 10.7939/dvn/8knneg

On August 24, 2019 Justine Karst and Nadir Erbilgin sampled a 30–50 cm segment of root from each of three aspen trees within each plot at the interface of the humus layer of the forest floor and mineral soil.

Description

We traced roots from boles and confirmed their identity to be aspen by taste-testing. Sampled roots were put on ice after collection and transported to the University of Alberta the same day and stored at -20 °C prior to processing.

Aspen roots were thawed and washed free of adhering soil. Fine roots (< 1 mm in diameter) were retained, cut into 1 cm fragments, mixed thoroughly in a dish of water, and subsampled for DNA sequencing. Those sequences identified as ectomycorrhizal were then assigned to exploration types based on Agerer (2006).

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James Franklin performed the benchwork for sequencing, Joseph Birch performed the bioinformatics, and Josh Wasyliw assigned the amplicon sequence variants into exploration types.

Links

Where it is published

Catalogue records · 1

Topics

Stated by source
Other · Other
Inferred from text
Evolutionary biology 73% · Sequencing 75%
Provenance · 2 source records, 21 field assertions
SourceKeyLast seenRaw
Borealisdoi:10.7939/DVN/8KNNEG10 d agoJSON v1
Agri-environmental Research Data Dataversedoi:10.7939/DVN/8KNNEG9 d agoJSON v1
FieldAssertionExtractorEvidence
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