Data · dataset · 2025
DNA metabarcoding data of arthropods from lower mountain range regions in southwest Germany
Listed in GBIF
The dataset comprises presence data on arthropods, but also on the groups 'Annelida', 'Ascomycota', 'Basidiomycota', 'Mollusca', 'Mucoromycota', 'Nematoda' and 'Proteobacteria'.
Description
For each detection of an Observational Taxonomic Unit (OTU), the number of reads is also given, as well as further information about the species assigned. The species information was derived from a comparison of the detected DNA sequences with the BOLD database and the database of the National Center for Biotechnology Information (NCBI).
Further, the Ribosomal Database Project (RDP) classifier was used to identify species. A consensus taxonomy compiles the species information dervied from the different databases and ranks the results according to their validity by using labels from A to C (Information on A, B, and C given at the description of the variables). The DNA metabarcoding process is decribed in detail in Uhler et al (2021): Relationship of insect biomass and richness with land use along a climate gradient (nature.com/articles/s41467-021-26181-3#Sec10 ).
Read the rest (2 more)
Since the samples were devided into large and small subsamples to improve the metabarcoding results, the data is given for each of the subsamples separately. The samples that went through DNA metabarcoding were derived from a Malaise trap experiment, for which five different types of Malaise traps were placed on a meadow and a forest clearing site each in three regions of southwest Germany (Nationalpark Hunsrück-Hochwald, Rhine-Main-Observatory, Steigerwald).
The sites in the Hunsrück and the Rhine-Main-Observatory are part of the Long-term Ecological Research Network Germany (LTER-D).
Links
Get the data
- Darwin Core Archive biocase.zfmk.de/ipt/archive.do?r=dsub578 ↗
download · from gbif
Where it is published
- GBIF dataset page gbif.org/dataset/a770c255-dc8a-434b-93fe-2caa9a32f717 ↗
landing page · from gbif
- DOI doi.org/10.15468/k7sg5s ↗
DOI / persistent id · from gbif
Documentation and papers
- Publisher page doi.org/10.20363/zc0n-5a36 ↗
documentation · from gbif
Catalogue records · 1
- GBIF API api.gbif.org/v1/dataset/a770c255-dc8a-434b-93fe-2caa9a32f717 ↗
metadata API · from gbif
Topics
- From keywords
- Life Sciences
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| GBIF | a770c255-dc8a-434b-93fe-2caa9a32f717 | 8 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · gbif | connector:gbif@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · gbif | connector:gbif@1.0.0 | |
| created_date | source · gbif | connector:gbif@1.0.0 | |
| description | source · gbif | connector:gbif@1.0.0 | /description |
| license | source · gbif | connector:gbif@1.0.0 | |
| publication_date | source · gbif | connector:gbif@1.0.0 | |
| spatial | source · gbif | connector:gbif@1.0.0 | |
| temporal | source · gbif | connector:gbif@1.0.0 | |
| title | source · gbif | connector:gbif@1.0.0 | /title |
| updated_date | source · gbif | connector:gbif@1.0.0 |