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Data · dataset · 2024

Allel-specific read counts for sprat population samples used in "Limited parallelism in genetic adaptation to brackish water bodies in European sprat and Atlantic herring"

Listed in Researchdata.se

"Sprat_DeDup_v2_HiC.fasta.gz" contians the draft genome used in the study, in FASTA format.

Description

It is the version upon the SNPs (single nucleotide polymorphisms) described have been called. "Sprat_pool_AD_DeDup_v2_PASS.txt.gz" contains tab-separated allele counts, as output using the "--counts" option in vcftools, from pool re-sequencting of the samples used in the study. Please see the corresponding supplementary information for sample codes etc.

These counts underly the frequencies used throughout the study.

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Where it is published

Catalogue records · 1

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Provenance · 1 source records, 8 field assertions
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Researchdata.seoai:researchdata.se:doi-10-17044-scilifelab-25836238/08 d agoJSON v1
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concepts[field].local:field:earth-environmentalmapping · researchdata seconnector:researchdata_se@1.0.0
concepts[field].local:field:life-sciencesmapping · researchdata seconnector:researchdata_se@1.0.0
concepts[field].local:field:medicine-healthmapping · researchdata seconnector:researchdata_se@1.0.0
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