Omics · study · 2026
Progressive cell fate specification in morphallactic regeneration [RNA-seq]
Listed in NCBI GEO
Through regeneration variable species replace lost parts of their body.
Description
This is achieved either by growth of new structures at the amputation side (epimorphosis), as is the case of axolotl limb regeneration, or through remodeling of the remaining tissue (morphallaxis), as happens in Hydra. Whereas work on epimorphic regeneration support a gradual proximal to distal establishment of cell identities, morphallactic regeneration is believed to rely on initial establishment of boundary conditions that organize the adjustment of the pattern.
Performing single cell RNA sequencing during regeneration in Hydra, we revealed the sequence of cells’ transdifferentiation into the missing identities. We provide evidence that morphallaxis proceeds with progressive specification of cell fates, unifying its mechanism with the one found for epimorphosis.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE300nnn/GSE300721 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE300721 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1281907 ncbi.nlm.nih.gov/bioproject/PRJNA1281907 ↗
project · from NCBI GEO
- PubMed 42230581 pubmed.ncbi.nlm.nih.gov/42230581 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE300721 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |