Omics · study · 2026
Arabidopsis aneuploidy mutant C30-81-as6, possesses enormous variations in multiple phenotypic characteristics
Listed in NCBI GEO
The mutant line of C30-81-as6 is an ion beam-generated, Arabidopsis Col-0 based, aneuploid mutant line confirmed by elevated DNA quantity by flow cytometry analysis and microscopic observations of additional chromosome.
Description
The mutant shows abnormal leaf shapes, petioless rosette leaves, elevated trichome bases and later flowering phenotypes. A set of candidate causal genes were identified using up and downregulated differentially expressed genes (DEGs) in transcriptome analysis.
Gene ontology analysis further supports mutant phenotypic characteristics and provides insights into its functional priorities including promotion of cellular structure and energy production. Meanwhile, the downregulation of senescence-related GO terms validates its extended vegetative phase. The gene density mapping of upregulated DEGs, densely positioned on the long arm of chromosome 2 and phenotype of C30-81-as6 largely resembles Arabidopsis additional chromosome 2 containing aneuploidy mutant.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE299nnn/GSE299045 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299045 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1272414 ncbi.nlm.nih.gov/bioproject/PRJNA1272414 ↗
project · from NCBI GEO
- PubMed 42120813 pubmed.ncbi.nlm.nih.gov/42120813 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Arabidopsis thaliana · Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE299045 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:3702 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |