Omics · study · 2026
Chilling Accumulation Shapes Transcriptomic Responses to Warming Exposure During Grapevine Deacclimation
Listed in NCBI GEO
Dormancy transitions in grapevine (Vitis vinifera) buds during winter are regulated by chilling accumulation and temperature cues, but the underlying molecular mechanisms remain unclear.
Description
We conducted time-series RNA-seq on ‘Cabernet Sauvignon’ buds collected across a chilling gradient and exposed to warm temperatures. Using weighted gene co-expression network analysis, empirical modeling, and a novel approach to estimate molecular temperature, we identified distinct gene expression patterns responsive to temperature alone, chilling alone, and their interaction.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE299nnn/GSE299692 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299692 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1276079 ncbi.nlm.nih.gov/bioproject/PRJNA1276079 ↗
project · from NCBI GEO
- PubMed 42560337 pubmed.ncbi.nlm.nih.gov/42560337 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE299692 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |