Omics · study · 2026
Transcriptomic analysis of channel catfish liver response to Aeromonas hydrophila infection correlated to skin integrity and fed state
Listed in NCBI GEO
The liver is a crucial organ involved in both immune regulation and metabolism.
Description
This study focuses on the hepatic immune response of channel catfish (Ictalurus punctatus) under varying feeding statuses and fin-clipping conditions following infection with Aeromonas hydrophila. Transcriptomic data revealed strong complement activation (C3, C5) in the fed groups, contributing to more severe tissue damage and inflammation.
In contrast, the unfed groups demonstrated delayed immune responses characterized by increased apoptosis and impaired tissue repair mechanisms. Histopathological findings showed that at 2 hours post-challenge, the NCN group exhibited moderate vascular congestion and edema, while no significant findings were detected in the other groups. By 4 hours post-challenge, vascular congestion, edema, and lymphoplasmacytic infiltration were detected in the non fed non clipped group, and at 8 hours post-challenge, moderate to severe edema and vascular congestion were observed.
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No significant histological findings were reported in the other treatment groups at these time points. Fin-clipping exacerbated immune dysregulation in the fed groups, contributing to higher mortality due to the combination of physical stress and nutritional status.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE280nnn/GSE280610 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE280610 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1179488 ncbi.nlm.nih.gov/bioproject/PRJNA1179488 ↗
project · from NCBI GEO
- PubMed 42210080 pubmed.ncbi.nlm.nih.gov/42210080 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE280610 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |