Data · collection · 2018
Pipeline of analyzing metagenomic sequence data
Listed in NASA Earthdata CMR
Metagenomics aims to understand microbial metabolic potential of a given environment by sequencing every genetic information of microbes.
Description
In reality, the DNA sequencing data is too huge to analyze. So, it is necessary to develop user-friendly bioinformatics tool.
Here, we developed a large pieces of the tools people need and deposit the programming source codes to the KOPRI data center. Programming source codes will help biologists easily analyze the large-scale DNA sequence data obtained from metagenomic samples.
Links
Documentation and papers
- PROJECT HOME PAGE kpdc.kopri.re.kr ↗
project · from NASA CMR
Catalogue records · 2
- CMR record cmr.earthdata.nasa.gov/search/concepts/C2244300800-AMD_KOPRI.html ↗
catalogue entry · from NASA CMR
- CMR UMM-JSON cmr.earthdata.nasa.gov/search/concepts/C2244300800-AMD_KOPRI.umm_json ↗
metadata API · from NASA CMR
Topics
- Stated by source
- Evolutionary Adaptation · NOT APPLICABLE · NOT APPLICABLE
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NASA Earthdata CMR | C2244300800-AMD_KOPRI | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[instrument].gcmd_instrument:not-applicable | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science/biosphere/ecological-dynamics/species-population-interactions/evolutionary-adaptation | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · NASA CMR | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[platform].gcmd_platform:not-applicable | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| created_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| description | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/Abstract |
| publication_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| temporal | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/TemporalExtents |
| title | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/EntryTitle |
| updated_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| version_label | source · NASA CMR | connector:nasa_cmr@1.0.0 |