Omics · dataset · 2019
Community, competition, and dispersal data on yeast inhabiting carnivorous Sarracenia Purpurea pitchers
Listed in Edmond
Fungal communities were assessed in a metacommunity of Sarracena purpurea carnivorous pitchers using 454 sequencing.
Description
Community data were supplemented with laboratory competition assays and targeted sampling of three yeast species using species-specific PCR primers. Data include an operational taxonomic unit (OTU) table with assigned taxonomy of each sequenced sample in Qiime 1.3.0 format, the mapping file (including location and successional time data) associated with sequenced samples, and a .fasta file containing a representative sequence for each OTU.
Additionally, there is are tab-delimited text files containing colony counts before and after a competition experiment with three selected pitcher yeast species, location and sampling time data for all studied pitchers, and presence/absence data for the three selected yeast species in all studied pitchers. These data are cited in the following paper: Boynton PJ, Peterson CN, Pringle A (2019) Superior dispersal ability can lead to persistent ecological dominance throughout succession.
Read the rest (1 more)
Applied and Environmental Microbiology 85:e02421-18. doi.org/10.1128/AEM.02421-18.
Links
Where it is published
- Dataverse dataset page edmond.mpg.de/dataset.xhtml?persistentId=doi%3A10.17617%2F3.1W ↗
landing page · from edmond mpdl mpg de
- DOI doi.org/10.17617/3.1w ↗
DOI / persistent id · from edmond mpdl mpg de
Catalogue records · 1
- Dataverse API edmond.mpg.de/api/datasets/:persistentId/?persistentId=doi%3A10.17617%2F3.1W ↗
metadata API · from edmond mpdl mpg de
Topics
- From keywords
- Astronomy & Astrophysics · Chemistry · Computer Science & AI · Earth & Environmental Science · Economics & Finance · Engineering · Humanities · Life Sciences · Life Sciences · Materials Science · Medicine & Health · Ocean & Atmospheric Science · Physics · Sequencing · Sequencing · Social Science
- Inferred from text
- Plant and fungus systematics and taxonomy 78% · Tabular 65% · Text 75%
Provenance · 2 source records, 25 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Edmond | doi:10.17617/3.1W | 9 d ago | JSON v1 |
| Edmond | doi:10.17617/3.1W | 7 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:field:310411 | enrichment · edmond mpdl mpg de | taxonomy-embedding@1.0.0 | title+keywords+description (78%) |
| concepts[field].local:field:astronomy | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:chemistry | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:computer-science-ai | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:earth-environmental | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:economics-finance | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:engineering | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:humanities | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:materials-science | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:ocean-atmospheric | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:physics | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:social-science | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[modality].local:modality:sequencing | mapping · edmond mpdl mpg de | vocabulary-mapper@1.0.0 | keywords['high-throughput sequencing'] |
| concepts[modality].local:modality:sequencing | mapping · edmond mpg de | vocabulary-mapper@1.0.0 | keywords['high-throughput sequencing'] |
| concepts[modality].local:modality:tabular | enrichment · edmond mpdl mpg de | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:text | enrichment · edmond mpdl mpg de | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | |
| description | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | /description |
| publication_date | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | |
| title | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | /name |
| updated_date | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | |
| version_label | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 |