Data · dataset · 2020
Functional annotation of predicted proteins in M. enterolobii (genome V1, INRA/JKI)
Listed in DataCite
Excel file summarizing the functional annotation of predicted protein-coding genes in M. enterolobii.We used PfamScan on the whole set of M. enterolobii proteins against the Pfam-A v32 library of HMM profiles to identify conserved protein domains.
Description
We used the Pfam annotation as well as the set of predicted proteins as an input to BLAST2GO pro v.1.12.11 to assign standard and ‘slim’ gene ontology terms according to the presence of Pfam domains, to BLASTp homology searches against the NCBI’s nr database and to Interproscan annotation performed internally in BLAST2GO.
Links
Where it is published
- Repository landing page figshare.com/articles/Functional_annotation_of_predicted_proteins_in_M_ente… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.11745495 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.11745495 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.11745495 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Agriculture, forestry, and fisheries
Related
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.11745495 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:agriculture-forestry-and-fisheries | source · DataCite | connector:datacite@1.0.0 | |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |