Data · dataset
[Community changes to vesicle addition] - NCBI accession metadata for microbial community responses to bacterial extracellular vesicles in the Sargasso Sea, collected on R/V Atlantic Explorer cruises AE2412 and AE2427 in Apr and Nov 2024 (Collaborative Research: Quantifying the role of microbial extracellular vesicles in marine dissolved organic matter production and consumption)
Listed in Biological and Chemical Oceanography Data Management Office (BCO-DMO) ERDDAP
This experiment details changes in marine microbial community composition in response to different carbon sources.
Description
To determine whether marine microbes can utilize bacterial extracellular vesicles as a carbon source, we conducted bottle incubations in the Sargasso Sea onboard the R/V Atlantic Explorer kept in a flow-through system. Surface seawater samples were supplemented with either buffer (control), glucose, or extracellular vesicles purified from the cyanobacterium Prochlorococcus or the heterotroph Alteromonas.
Community samples were collected over a period of four days aboard the R/V Atlantic Explorer, during cruises AE2412 and AE2427 in April and November 2024. 16S rRNA amplicon sequencing (targeting the V4-V5 region) was carried out to enable analysis of changes in the community. This dataset provides the NCBI/SRA accession metadata associated with this 16S rRNA amplicon sequencing. These data will be useful in understanding how bacterial extracellular vesicles - numerically abundant nanoscale structures released by all cells - function as a component of marine dissolved organic carbon pools.
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Samples were collected by Samantha Silvestri, Dr. Ashley Stein, Christian Nielsen, and Caroline Jongbloed of Wellesley College; and Dr. Krista Longnecker of Woods Hole Oceanographic Institution.
Links
Where it is published
- ERDDAP dataset info erddap.bco-dmo.org/erddap/info/bcodmo_dataset_997617_v1/index.html ↗
landing page · from erddap bco dmo org
Catalogue records · 1
- ERDDAP tabledap access form erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_997617_v1.html ↗
metadata API · from erddap bco dmo org
Topics
- From keywords
- Ocean & Atmospheric Science
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 5 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Biological and Chemical Oceanography Data Management Office (BCO-DMO) ERDDAP | bcodmo_dataset_997617_v1 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · erddap bco dmo org | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | /summary |
| title | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | /title |