Data · dataset · 2014
High-Throughput Sequencing of Human Immunoglobulin Variable Regions with Subtype Identification
Listed in Zenodo
Raw Illumina MiSeq data in zipped FASTQ format.
Description
The data set includes demultiplexed samples from three different time points (_wk*_) of patient ZA159 (159_*), samples from four different preps of a healthy donor (HD1_*), and samples from IgG subtype sorted cells of a healthy donor (HD3_*). Every sample consists of forward (_R1_), reverse (_R2_) and index read 1 (_I1_).
Links
Get the data
- 159_wk213_S5_L001_R1_001.fastq.gz zenodo.org/api/records/10863/files/159_wk213_S5_L001_R1_001.fastq.gz/cont… ↗
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- HD1_prep2_S2_L001_R2_001.fastq.gz zenodo.org/api/records/10863/files/HD1_prep2_S2_L001_R2_001.fastq.gz/cont… ↗
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- 159_wk181_S3_L001_R1_001.fastq.gz zenodo.org/api/records/10863/files/159_wk181_S3_L001_R1_001.fastq.gz/cont… ↗
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- HD1_prep2_S2_L001_I1_001.fastq.gz zenodo.org/api/records/10863/files/HD1_prep2_S2_L001_I1_001.fastq.gz/cont… ↗
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- HD1_prep1_S1_L001_R2_001.fastq.gz zenodo.org/api/records/10863/files/HD1_prep1_S1_L001_R2_001.fastq.gz/cont… ↗
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- HD3_IgG1sorted_S1_L001_I1_001.fastq.gz zenodo.org/api/records/10863/files/HD3_IgG1sorted_S1_L001_I1_001.fastq.gz… ↗
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- HD3_IgG2sorted_S2_L001_I1_001.fastq.gz zenodo.org/api/records/10863/files/HD3_IgG2sorted_S2_L001_I1_001.fastq.gz… ↗
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- HD3_IgG2sorted_S2_L001_R1_001.fastq.gz zenodo.org/api/records/10863/files/HD3_IgG2sorted_S2_L001_R1_001.fastq.gz… ↗
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- HD3_IgG3sorted_S3_L001_I1_001.fastq.gz zenodo.org/api/records/10863/files/HD3_IgG3sorted_S3_L001_I1_001.fastq.gz… ↗
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- HD1_prep1_S1_L001_R1_001.fastq.gz zenodo.org/api/records/10863/files/HD1_prep1_S1_L001_R1_001.fastq.gz/cont… ↗
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- 159_wk94_S2_L001_R1_001.fastq.gz zenodo.org/api/records/10863/files/159_wk94_S2_L001_R1_001.fastq.gz/conte… ↗
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- HD1_prep3_S3_L001_R2_001.fastq.gz zenodo.org/api/records/10863/files/HD1_prep3_S3_L001_R2_001.fastq.gz/cont… ↗
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- 159_wk94_S2_L001_I1_001.fastq.gz zenodo.org/api/records/10863/files/159_wk94_S2_L001_I1_001.fastq.gz/conte… ↗
download · from Zenodo
- HD1_prep1_S1_L001_I1_001.fastq.gz zenodo.org/api/records/10863/files/HD1_prep1_S1_L001_I1_001.fastq.gz/cont… ↗
download · from Zenodo
- HD3_IgG2sorted_S2_L001_R2_001.fastq.gz zenodo.org/api/records/10863/files/HD3_IgG2sorted_S2_L001_R2_001.fastq.gz… ↗
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- HD3_IgG1sorted_S1_L001_R2_001.fastq.gz zenodo.org/api/records/10863/files/HD3_IgG1sorted_S1_L001_R2_001.fastq.gz… ↗
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- HD1_prep4_S4_L001_I1_001.fastq.gz zenodo.org/api/records/10863/files/HD1_prep4_S4_L001_I1_001.fastq.gz/cont… ↗
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- 159_wk213_S5_L001_I1_001.fastq.gz zenodo.org/api/records/10863/files/159_wk213_S5_L001_I1_001.fastq.gz/cont… ↗
download · from Zenodo
- HD1_prep3_S3_L001_R1_001.fastq.gz zenodo.org/api/records/10863/files/HD1_prep3_S3_L001_R1_001.fastq.gz/cont… ↗
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- 159_wk181_S3_L001_R2_001.fastq.gz zenodo.org/api/records/10863/files/159_wk181_S3_L001_R2_001.fastq.gz/cont… ↗
download · from Zenodo
- HD1_prep2_S2_L001_R1_001.fastq.gz zenodo.org/api/records/10863/files/HD1_prep2_S2_L001_R1_001.fastq.gz/cont… ↗
download · from Zenodo
- HD3_IgG3sorted_S3_L001_R2_001.fastq.gz zenodo.org/api/records/10863/files/HD3_IgG3sorted_S3_L001_R2_001.fastq.gz… ↗
download · from Zenodo
- HD1_prep3_S3_L001_I1_001.fastq.gz zenodo.org/api/records/10863/files/HD1_prep3_S3_L001_I1_001.fastq.gz/cont… ↗
download · from Zenodo
- HD3_IgG1sorted_S1_L001_R1_001.fastq.gz zenodo.org/api/records/10863/files/HD3_IgG1sorted_S1_L001_R1_001.fastq.gz… ↗
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- HD1_prep4_S4_L001_R1_001.fastq.gz zenodo.org/api/records/10863/files/HD1_prep4_S4_L001_R1_001.fastq.gz/cont… ↗
download · from Zenodo
- 159_wk181_S3_L001_I1_001.fastq.gz zenodo.org/api/records/10863/files/159_wk181_S3_L001_I1_001.fastq.gz/cont… ↗
download · from Zenodo
- 159_wk213_S5_L001_R2_001.fastq.gz zenodo.org/api/records/10863/files/159_wk213_S5_L001_R2_001.fastq.gz/cont… ↗
download · from Zenodo
- HD3_IgG3sorted_S3_L001_R1_001.fastq.gz zenodo.org/api/records/10863/files/HD3_IgG3sorted_S3_L001_R1_001.fastq.gz… ↗
download · from Zenodo
- HD1_prep4_S4_L001_R2_001.fastq.gz zenodo.org/api/records/10863/files/HD1_prep4_S4_L001_R2_001.fastq.gz/cont… ↗
download · from Zenodo
- 159_wk94_S2_L001_R2_001.fastq.gz zenodo.org/api/records/10863/files/159_wk94_S2_L001_R2_001.fastq.gz/conte… ↗
download · from Zenodo
Where it is published
- Zenodo record zenodo.org/records/10863 ↗
landing page · from Zenodo
- DOI doi.org/10.5281/zenodo.10863 ↗
DOI / persistent id · from Zenodo
Catalogue records · 1
- Zenodo API zenodo.org/api/records/10863 ↗
metadata API · from Zenodo
Topics
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Zenodo | 10863 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · Zenodo | connector:zenodo@1.0.0 | /metadata/access_right |
| byte_size | source · Zenodo | connector:zenodo@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · Zenodo | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · Zenodo | connector:zenodo@1.0.0 | |
| description | source · Zenodo | connector:zenodo@1.0.0 | /metadata/description |
| license | source · Zenodo | connector:zenodo@1.0.0 | /metadata/license |
| publication_date | source · Zenodo | connector:zenodo@1.0.0 | |
| title | source · Zenodo | connector:zenodo@1.0.0 | /metadata/title |
| updated_date | source · Zenodo | connector:zenodo@1.0.0 |