← Search

Table · dataset · 2026

<p>The parameters of the SINDy.</p>

Listed in UCL Research Data Repository and HKU DataHub and Swinburne Figshare and DaYta Ya Rona and SUNScholarData and figshare and Loughborough Research Repository and GRANTS Data and UP Research Data Repository — shown once because both records carry DOI 10.1371/journal.pone.0344409.t002

<div><p>The COVID-19 pandemic presented severe challenges in understanding and predicting the spread of infectious diseases, necessitating innovative approaches beyond traditional epidemiological models.

Description

This study introduces an advanced method for automated model discovery using the Sparse Identification of Nonlinear Dynamics (SINDy) algorithm, leveraging a dataset from the COVID-19 outbreak in Thuringia, Germany, encompassing more than 400,000 patient records and vaccination data.

We develop a flexible, data-driven model capturing pandemic dynamics, incorporating external factors and interventions into the mathematical framework. The fixed coefficient values globally determined by SINDy were not accurate for local modelling of the data, a limitation of prior SINDy-based epidemiological applications that our framework directly addresses. We therefore refined our technique based on the differential equations as found by SINDy, by investigating three modifications that account for recent local data, each offering different strengths for short-term prediction, scenario analysis, and capturing nonlinear effects, achieving an R² of 0.87 at a one-week horizon.

Read the rest (2 more)

In a first approach, we re-optimized the coefficient values using seven days of past data, without changing the globally determined differential equation. In a second approach, we allowed a temporal dependence of the coefficient values, fitted using all previous data, in combination with regularization. As a last method, we kept the coefficients fixed to the original values but augmented the differential equation with a small neural network, locally optimized to the data of the past week.

Our results link vaccination and public health measures to the pandemic's trajectory. The proposed model allows simulation of intervention scenarios, such as vaccination strategies and public health interventions. While the current study is based on retrospective data from a single region, the framework could serve as a basis for exploring responses to future outbreaks, subject to further validation.</p></div>

Links

Where it is published

Catalogue records · 1

Topics

From keywords
Astronomy & Astrophysics · Cancer · Cancer · Cancer · Cancer · Cancer · Cancer · Cancer · Cancer · Cancer · Chemistry · Chemistry · Computer Science & AI · Computer Science & AI · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Economics & Finance · Economics & Finance · Engineering · Engineering · Engineering · Engineering · Humanities · Humanities · Humanities · Humanities · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Materials Science · Mathematics & Statistics · Mathematics & Statistics · Mathematics & Statistics · Mathematics & Statistics · Mathematics & Statistics · Mathematics & Statistics · Mathematics & Statistics · Mathematics & Statistics · Mathematics & Statistics · Medicine & Health · Medicine & Health · Medicine & Health · Medicine & Health · Medicine & Health · Medicine & Health · Medicine & Health · Medicine & Health · Medicine & Health · Ocean & Atmospheric Science · Psychology & Behavioral Science · Research, science and technology policy · Research, science and technology policy · Research, science and technology policy · Research, science and technology policy · Research, science and technology policy · Research, science and technology policy · Research, science and technology policy · Research, science and technology policy · Research, science and technology policy · Social Science · Social Science · Social Science · Social Science
Inferred from text
Simulation 75%
Provenance · 9 source records, 82 field assertions
SourceKeyLast seenRaw
UCL Research Data Repositoryoai:figshare.com:article/3404885312 d agoJSON v1
HKU DataHuboai:figshare.com:article/3404885312 d agoJSON v1
Swinburne Figshareoai:figshare.com:article/3404885312 d agoJSON v1
DaYta Ya Ronaoai:figshare.com:article/3404885312 d agoJSON v1
SUNScholarDataoai:figshare.com:article/3404885312 d agoJSON v1
figshareoai:figshare.com:article/3404885312 d agoJSON v1
Loughborough Research Repositoryoai:figshare.com:article/3404885311 d agoJSON v1
GRANTS Dataoai:figshare.com:article/3404885311 d agoJSON v1
UP Research Data Repositoryoai:figshare.com:article/3404885311 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · rdr ucl ac ukconnector:rdr_ucl_ac_uk@1.0.0
concepts[disease].local:disease:cancermapping · figshare swinburne edu auvocabulary-mapper@1.0.0keywords['Cancer']
concepts[disease].local:disease:cancermapping · figshare comvocabulary-mapper@1.0.0keywords['Cancer']
concepts[disease].local:disease:cancermapping · datahub hku hkvocabulary-mapper@1.0.0keywords['Cancer']
concepts[disease].local:disease:cancermapping · researchdata up ac zavocabulary-mapper@1.0.0keywords['Cancer']
concepts[disease].local:disease:cancermapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Cancer']
concepts[disease].local:disease:cancermapping · grantsdata jst go jpvocabulary-mapper@1.0.0keywords['Cancer']
concepts[disease].local:disease:cancermapping · scholardata sun ac zavocabulary-mapper@1.0.0keywords['Cancer']
concepts[disease].local:disease:cancermapping · dayta nwu ac zavocabulary-mapper@1.0.0keywords['Cancer']
concepts[disease].local:disease:cancermapping · rdr ucl ac ukvocabulary-mapper@1.0.0keywords['Cancer']
concepts[field].anzsrc:field:440710mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Science Policy']
concepts[field].anzsrc:field:440710mapping · scholardata sun ac zavocabulary-mapper@1.0.0keywords['Science Policy']
concepts[field].anzsrc:field:440710mapping · figshare comvocabulary-mapper@1.0.0keywords['Science Policy']
concepts[field].anzsrc:field:440710mapping · researchdata up ac zavocabulary-mapper@1.0.0keywords['Science Policy']
concepts[field].anzsrc:field:440710mapping · rdr ucl ac ukvocabulary-mapper@1.0.0keywords['Science Policy']
concepts[field].anzsrc:field:440710mapping · datahub hku hkvocabulary-mapper@1.0.0keywords['Science Policy']
concepts[field].anzsrc:field:440710mapping · grantsdata jst go jpvocabulary-mapper@1.0.0keywords['Science Policy']
concepts[field].anzsrc:field:440710mapping · figshare swinburne edu auvocabulary-mapper@1.0.0keywords['Science Policy']
concepts[field].anzsrc:field:440710mapping · dayta nwu ac zavocabulary-mapper@1.0.0keywords['Science Policy']
concepts[field].local:field:astronomymapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:chemistrymapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:chemistrymapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:computer-science-aimapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:computer-science-aimapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:earth-environmentalmapping · dayta nwu ac zaconnector:dayta_nwu_ac_za@1.0.0
concepts[field].local:field:earth-environmentalmapping · grantsdata jst go jpconnector:grantsdata_jst_go_jp@1.0.0
concepts[field].local:field:earth-environmentalmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:earth-environmentalmapping · datahub hku hkconnector:datahub_hku_hk@1.0.0
concepts[field].local:field:earth-environmentalmapping · scholardata sun ac zaconnector:scholardata_sun_ac_za@1.0.0
concepts[field].local:field:earth-environmentalmapping · rdr ucl ac ukconnector:rdr_ucl_ac_uk@1.0.0
concepts[field].local:field:earth-environmentalmapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:earth-environmentalmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:earth-environmentalmapping · figshare swinburne edu auconnector:figshare_swinburne_edu_au@1.0.0
concepts[field].local:field:economics-financemapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:economics-financemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:engineeringmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:engineeringmapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:engineeringmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:engineeringmapping · dayta nwu ac zaconnector:dayta_nwu_ac_za@1.0.0
concepts[field].local:field:humanitiesmapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:humanitiesmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:humanitiesmapping · dayta nwu ac zaconnector:dayta_nwu_ac_za@1.0.0
concepts[field].local:field:humanitiesmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:life-sciencesmapping · figshare swinburne edu auconnector:figshare_swinburne_edu_au@1.0.0
concepts[field].local:field:life-sciencesmapping · datahub hku hkconnector:datahub_hku_hk@1.0.0
concepts[field].local:field:life-sciencesmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:life-sciencesmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:life-sciencesmapping · grantsdata jst go jpconnector:grantsdata_jst_go_jp@1.0.0
concepts[field].local:field:life-sciencesmapping · dayta nwu ac zaconnector:dayta_nwu_ac_za@1.0.0
concepts[field].local:field:life-sciencesmapping · scholardata sun ac zaconnector:scholardata_sun_ac_za@1.0.0
concepts[field].local:field:life-sciencesmapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:life-sciencesmapping · rdr ucl ac ukconnector:rdr_ucl_ac_uk@1.0.0
concepts[field].local:field:materials-sciencemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:mathematics-statisticsmapping · figshare swinburne edu auconnector:figshare_swinburne_edu_au@1.0.0
concepts[field].local:field:mathematics-statisticsmapping · rdr ucl ac ukconnector:rdr_ucl_ac_uk@1.0.0
concepts[field].local:field:mathematics-statisticsmapping · datahub hku hkconnector:datahub_hku_hk@1.0.0
concepts[field].local:field:mathematics-statisticsmapping · dayta nwu ac zaconnector:dayta_nwu_ac_za@1.0.0
concepts[field].local:field:mathematics-statisticsmapping · scholardata sun ac zaconnector:scholardata_sun_ac_za@1.0.0
concepts[field].local:field:mathematics-statisticsmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:mathematics-statisticsmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:mathematics-statisticsmapping · grantsdata jst go jpconnector:grantsdata_jst_go_jp@1.0.0
concepts[field].local:field:mathematics-statisticsmapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:medicine-healthmapping · figshare swinburne edu auconnector:figshare_swinburne_edu_au@1.0.0
concepts[field].local:field:medicine-healthmapping · datahub hku hkconnector:datahub_hku_hk@1.0.0
concepts[field].local:field:medicine-healthmapping · rdr ucl ac ukconnector:rdr_ucl_ac_uk@1.0.0
concepts[field].local:field:medicine-healthmapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:medicine-healthmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:medicine-healthmapping · scholardata sun ac zaconnector:scholardata_sun_ac_za@1.0.0
concepts[field].local:field:medicine-healthmapping · grantsdata jst go jpconnector:grantsdata_jst_go_jp@1.0.0
concepts[field].local:field:medicine-healthmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:medicine-healthmapping · dayta nwu ac zaconnector:dayta_nwu_ac_za@1.0.0
concepts[field].local:field:ocean-atmosphericmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:psychology-behavioralmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:social-sciencemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:social-sciencemapping · dayta nwu ac zaconnector:dayta_nwu_ac_za@1.0.0
concepts[field].local:field:social-sciencemapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:social-sciencemapping · figshare comconnector:figshare_com@1.0.0
concepts[method].local:method:simulationenrichment · rdr ucl ac ukkeyword-concept-rules@1.0.0title+description (75%)
descriptionsource · rdr ucl ac ukconnector:rdr_ucl_ac_uk@1.0.0/metadata/dc/description
licensesource · rdr ucl ac ukconnector:rdr_ucl_ac_uk@1.0.0/metadata/dc/rights
publication_datesource · rdr ucl ac ukconnector:rdr_ucl_ac_uk@1.0.0
titlesource · rdr ucl ac ukconnector:rdr_ucl_ac_uk@1.0.0/metadata/dc/title