Data · dataset · 2026
Priloga F
Listed in NCL Data
<p dir="ltr">SLO: Datoteka vsebuje povzetek podatkov o polimorfizmih SNP za posamezne genotipe, pridobljenih iz datoteke VCF.
Description
Namen analize je oceniti kakovost, popolnost in genetsko variabilnost genotipskih podatkov med proučevanimi vzorci.</p><p dir="ltr">Za vsak genotip so prikazani ključni kazalniki, vključno s številom manjkajočih genotipov (missing data) in številom oziroma deležem heterozigotnih SNP mest (heterozygous sites).
Manjkajoči podatki predstavljajo SNP pozicije, pri katerih genotipa zaradi nezadostne kakovosti, nizke pokritosti sekvenciranja ali drugih tehničnih razlogov ni bilo mogoče zanesljivo določiti. Heterozigotna mesta pa označujejo SNP lokuse, pri katerih sta prisotna dva različna alela, ter zato odražajo stopnjo genetske raznolikosti oziroma heterozigotnosti posameznega genotipa</p><p dir="ltr">EN: The file contains a summary of single-nucleotide polymorphism (SNP) data for individual genotypes, derived from a VCF (Variant Call Format) file.
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The purpose of the analysis is to assess the quality, completeness, and genetic variability of genotype data across the studied samples.</p><p dir="ltr">For each genotype, the file reports key metrics, including the number of missing genotype calls (missing data) and the number or proportion of heterozygous SNP sites. Missing data refer to SNP positions for which the genotype could not be assigned reliably, for example because of insufficient sequencing coverage, low data quality, or other technical limitations.
Heterozygous sites represent SNP loci at which two different alleles are present and therefore reflect the level of genetic diversity, or heterozygosity, within an individual genotype.</p>
Links
Where it is published
- DOI doi.org/10.6084/m9.figshare.33182840.v2 ↗
DOI / persistent id · from data ncl ac uk
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from data ncl ac uk
Topics
- From keywords
- Earth & Environmental Science · Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCL Data | oai:figshare.com:article/33182840 | 32 h ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · data ncl ac uk | connector:data_ncl_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · data ncl ac uk | connector:data_ncl_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · data ncl ac uk | connector:data_ncl_ac_uk@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · data ncl ac uk | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · data ncl ac uk | connector:data_ncl_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · data ncl ac uk | connector:data_ncl_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · data ncl ac uk | connector:data_ncl_ac_uk@1.0.0 | |
| title | source · data ncl ac uk | connector:data_ncl_ac_uk@1.0.0 | /metadata/dc/title |