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Data · dataset · 2026

Source Data for A pathogen-derived small RNA modulates host immunity for chronic parasitism

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This dataset provides the underlying source data supporting the findings and figures presented in the manuscript titled "A pathogen-derived small RNA fine-tunes host immunity for chronic parasitism".The dataset is organized into four primary folders corresponding to the figures in the manuscript:Fig.1_data:Numerical Data: Raw values for small RNA length distribution (Fig. 1C) and the TPM expression matrix (Fig.1D).Image Data: Original, uncropped gel image for Fig.1BTransparency: An additional annotation PDF is provided to indicate the specific bands and molecular weight markers.Fig.2_data:Target Prediction (Venn Analysis): Raw gene lists used to generate the Venn diagrams for three miRNAs: OsmiRNA286 (Fig. 2A), OsmiRNA1 (Fig. 2D), and OsmiRNA2 (Fig. 2G).

The spreadsheets categorize target genes based on the intersection of three prediction algorithms (miRanda, RNAhybrid, and PITA).Functional Enrichment: Detailed GO (Gene Ontology) and KEGG (Kyoto Encyclopedia of Genes and Genomes) enrichment analysis data for the core target genes (intersection of all three software). These files include gene counts, enrichment scores, and p-values corresponding to OsmiRNA286 (Fig. 2B-C), OsmiRNA1 (Fig. 2E-F), and OsmiRNA2 (Fig. 2H-I).Fig.3_data:Luciferase Assay: Raw Firefly and Renilla bioluminescence readings and normalized ratios for Figure 3B.qPCR Data: Raw Ct values and 2−ΔΔCt calculations for Fig. 3C and 3D.Fig.4_data:qPCR Data: Raw numerical data supporting Fig. 4C.Image Data: A sub-folder (Raw_Image_Fig.4D) containing the original, unaltered immunofluorescence (IF) images (DAPI, Cy3, DIC, and Merge channels) at full field-of-view for Fig. 4D.Fig.5_data:Numerical Data: A dedicated folder containing raw qPCR data for Fig. 5B and detailed spore counting spreadsheets for Fig. 5C.

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The counting files include embedded Excel formulas demonstrating the conversion from raw hemocytometer counts to final concentrations.Image Data: A sub-folder containing original, unaltered microscopy images (captured at 10x magnification) for Fig. 5D.Fig.6_data:Target Prediction: Numerical results of miRanda target site predictions for the attacin 3'UTR across various species (Fig. 6A).Phylogenetic Data: Raw Newick (.nwk) files for the phylogenetic trees constructed using CDS (Conserved) and 3'UTR (Divergent) sequences (Fig. 6B).Nucleotide Diversity: Raw numerical data and calculated Pi (π) values supporting the nucleotide diversity analysis shown in Fig. 6C.Species coverage: species number in every midpoint (Fig.6D).Sequence Data: A compiled text file containing the 3'UTR sequences of attacin from multiple species used for sequence alignment and target site conservation analysis (Fig. 6E).Fig.S1_data Correlation of Os-milRNA2 and attacin-1Fig.S2_dataLuciferase Assay: Raw Firefly and Renilla bioluminescence readings and normalized ratios for Figure S2B.qPCR Data: Zinc transpoter ΔCt values and 2−ΔΔCt calculations for Fig. S3C.Table S1.

List of primer sequences used for quantitative real-time PCR (qPCR) analysis.Table S2. Genome mapping analysis of identified Os-milRNAs.Table S3. Functional annotations of predicted target genes for Os-milRNA1.Table S4.

Functional annotations of predicted target genes for Os-milRNA2.Table S5. miRanda-based binding affinity prediction of Os-milRNA2 binding sites across various insect species.Table S6. In silinco specificity analysis of Antagomir and NC sequences.Data Standards:Statistical Calculations: All P-values were derived from Student’s t-tests or One-way ANOVA with Tukey’s post-hoc tests as specified in the Excel files.Image Integrity: All provided images are original, high-resolution, and have not undergone any manipulative adjustments.Accession: All analyses are based on raw sequencing data deposited in the Genome Sequence Archive (GSA) under accession number CRA038699.

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Inferred from text
Evolutionary biology 71% · Image 75% · Microscopy 75% · Sequencing 75% · Tabular 65% · Text 75%
Provenance · 1 source records, 16 field assertions
SourceKeyLast seenRaw
ScienceDB10.57760/sciencedb.3125111 d agoJSON v1
FieldAssertionExtractorEvidence
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concepts[modality].local:modality:imageenrichment · scidb cnkeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:microscopyenrichment · scidb cnkeyword-concept-rules@1.0.0title+description (75%)
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