Population structure and antimicrobial resistance patterns of Salmonella Typhi isolates in urban Dhaka, Bangladesh from 2004 to 2016

It contains supporting image of population structure and country of origin of genotype 3.3.2 isolates (S1 Figure); an image of Bangladesh S. Typhi population structure showing acquired AMR genes, and plasmids (S2 Figure); an Excel spreadsheet containing data of 202 S. Typhi isolates from 3 different study sites in Dhaka, Bangladesh between 2004–2016; an Excel spreadsheet outlining excluded repetitive and phage regions in CT18 (AL513382) reference genome (S2 Table); Excel data of 818 S. Typhi isolates from Bangladesh including previous studies between 1998–2016 (S3 Table); a Word document of Genotyping results for the 818 S. Typhi isolates from Bangladesh (S4 Table); and a Word document of genetic determinants of antimicrobial resistance in S. Typhi isolates from Bangladesh (S5 Table).