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Data · dataset · 2022

Excluded repeat and phage regions in PNG MDUST348 2.1.7.2 completed reference sequence

Listed in LSHTM Data Compass

This table details regions filtered from PNG genotype 2.1.7 alignment, where repetitive regions were identified using the ncumer command in MUMmer (v3.23) and integrated prophage sequences detected using the PHAge Search Tool Enhanced Release.

Description

Further recombination were removed with Gubbins (v2.3.2).

Links

Where it is published

Catalogue records · 1

Topics

From keywords
Earth & Environmental Science · Humanities · Life Sciences · Medicine & Health · Social Science
Inferred from text
Genetics 69% · Tabular 65%
Provenance · 1 source records, 10 field assertions
SourceKeyLast seenRaw
LSHTM Data Compassoai:datacompass.lshtm.ac.uk:31998 d agoJSON v1
FieldAssertionExtractorEvidence
concepts[field].anzsrc:group:3105enrichment · lshtm ac uktaxonomy-embedding@1.0.0title+keywords+description (69%)
concepts[field].local:field:earth-environmentalmapping · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
concepts[field].local:field:humanitiesmapping · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
concepts[field].local:field:life-sciencesmapping · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
concepts[field].local:field:medicine-healthmapping · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
concepts[field].local:field:social-sciencemapping · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
concepts[modality].local:modality:tabularenrichment · lshtm ac ukkeyword-concept-rules@1.0.0title+description (65%)
descriptionsource · lshtm ac ukconnector:lshtm_ac_uk@1.0.0/metadata/dc/description
publication_datesource · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
titlesource · lshtm ac ukconnector:lshtm_ac_uk@1.0.0/metadata/dc/title