Omics · study · 2026
Genome-wide mapping of NsrC-associated DNA regions in Synechococcus elongatus PCC 7942 by ChIP-seq
Listed in NCBI GEO
This study investigates the genome-wide DNA-binding profile of the small regulatory protein NsrC in Synechococcus elongatus PCC 7942.
Description
Chromatin immunoprecipitation sequencing was performed using a strain expressing NsrC fused to mNeonGreen and FLAG (D1339). Two biological ChIP replicates and their matched input controls were analyzed to identify NsrC-associated genomic regions and support evaluation of its role in regulating phycobilisome biosynthesis genes.
Intellectual property notice: The submitters claim intellectual property rights in certain aspects of this study. Users intending to publish analyses or file patent applications substantially based on these data are requested to contact the corresponding investigator, Guoyan Zhao (zhaoguoyan@sdnu.edu.cn), in advance. This notice does not restrict public access to the GEO/SRA records.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE343nnn/GSE343576 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE343576 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1510823 ncbi.nlm.nih.gov/bioproject/PRJNA1510823 ↗
project · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE343576 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |