Data · dataset · 2015
Strong selective sweeps on the X chromosome in the human-chimpanzee ancestor explain its low divergence
Listed in DataCite
* CoalHMM estimates in 1Mb chunks ILS09_gamma_aln_coord_clean_fixscale.csv Estimates for the full genome alignment obtained as described in Nature. 2012 Mar 7;483(7388):169-75. doi: 10.1038/nature10842.
Description
- Alignment statistics for the X chromosome chrX.statistics.csv This file has been generated by MafFilter on the the human, chimpanzee, gorilla and orangutan alignment. It contains counts on the various parsimony-informative sites.
- ILS in 100 kb windows along the genome alignment. full_scan_100k.csv ILS computed by window scanning along the posterior decoding from the CoalHMM method.
- Divergence ratios computed along the X chromosome. Compara.epo_6_primates_hsap-projected.chrXnew.subset.nogap.cleaned_aln.statistics.csv This file was generated by MafFilter on the X chromosome alignment. It contains the divergence estimates between human, chimpanzee, gorilla and orangutan in 100 kb windows.
- Nucleotide diversity for the X chromosome in 14 human populations piX_100kb_regions.csv This file was generated from the 1000 Human Genomes Project data.
- Genome coordinates of the 8 low-ILS regions PNILSR_1Mb_10pc_edited.csv Coordinates are according to human hg19.
- Coordinates of regions devoid of neanderthal introgression (Asian population) Neanderthal_ASN.csv Coordinates are according to human hg19.
- Coordinates of regions devoid of neanderthal introgression (European population) Neanderthal_EUR.csv Coordinates are according to human hg19.
- Ampliconic regions AmpliconicRegions_hg19.csv Ampliconic regions in hg19 coordinates. The two last column describe is the region was included in our genome alignment, and if it was comprised in a low-ILS region.
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/Strong_selective_sweeps_on_the_X_chromosome_i… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.1408813 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1408813 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1408813 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Biological sciences · Computer and information sciences
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1408813 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |