Omics · dataset · 2025
Evolvability
Listed in Edmond
Description
Introduction This record contains data accompanying the paper: Experimental evolution of evolvability Michael Barnett, Lena Zeller, Paul B. Rainey doi:10.1101/2024.05.01.592015 Content of expevolv.zip The folder 'Population B whole-genome seq' contains all fastQ files derived from whole-genome re-sequencing of clones within 'meta-population B' that were used to identify and order mutations. A GenBank file 'OV986001-SBW25_genome' provides the appropriate reference genome for mapping these sequences.
Names of fastQs files accord to the table 'interactive-pop-B.csv', which itself is the input used to visualise lineage dynamics of meta-population B within the paper via the software 'Colgen'. The interactive lineage visualization of meta-population B can be accessed at micropop.evolbio.mpg.de/data/evolve. Colgen can be found here: gitlab.com/ecoevomath/colgen And its accompanying paper here: doi:10.1101/2024.05.10.593459 The folder 'Sanger seq from T10-M3 cel+ transposon mutagenesis' contains all Sanger sequences used to identify transposon insertion sites following transposon mutagenesis.
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These can be mapped to the GenBank reference file. Contents of genetic_constructs.zip The folder 'Genetic constructs' contains annotated GenBank files for the novel donor plasmids used in this study to introduce genetic changes.
Links
Where it is published
- Dataverse dataset page edmond.mpg.de/dataset.xhtml?persistentId=doi%3A10.17617%2F3.5PEE52 ↗
landing page · from edmond mpdl mpg de
- DOI doi.org/10.17617/3.5pee52 ↗
DOI / persistent id · from edmond mpdl mpg de
Catalogue records · 1
- Dataverse API edmond.mpg.de/api/datasets/:persistentId/?persistentId=doi%3A10.17617%2F3.5P… ↗
metadata API · from edmond mpdl mpg de
Topics
- From keywords
- Astronomy & Astrophysics · Chemistry · Computer Science & AI · Earth & Environmental Science · Economics & Finance · Engineering · Humanities · Life Sciences · Life Sciences · Materials Science · Medicine & Health · Ocean & Atmospheric Science · Physics · Sequencing · Sequencing · Social Science
- Inferred from text
- Evolution of developmental systems 76% · Tabular 65%
Provenance · 2 source records, 26 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Edmond | doi:10.17617/3.5PEE52 | 10 d ago | JSON v1 |
| Edmond | doi:10.17617/3.5PEE52 | 8 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
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| concepts[field].dataverse_subject:biology | source · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:astronomy | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:chemistry | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:computer-science-ai | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:earth-environmental | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:economics-finance | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
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| concepts[field].local:field:humanities | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:materials-science | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:ocean-atmospheric | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:physics | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:social-science | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[modality].local:modality:sequencing | mapping · edmond mpdl mpg de | vocabulary-mapper@1.0.0 | keywords['next generation sequencing'] |
| concepts[modality].local:modality:sequencing | mapping · edmond mpg de | vocabulary-mapper@1.0.0 | keywords['next generation sequencing'] |
| concepts[modality].local:modality:tabular | enrichment · edmond mpdl mpg de | keyword-concept-rules@1.0.0 | title+description (65%) |
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| description | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | /description |
| publication_date | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | |
| title | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | /name |
| updated_date | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | |
| version_label | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 |