Omics · study · 2026
RNA-seq of cold stressed C. elegans
Listed in NCBI GEO
Cold stressed and non-stressed wild type, sgk-1(ok538), pqm-1(ok485) and pqm-1(ok485); sgk-1(ok538) animals are collected for RNA-seq analysis, to reveal transcripteome changes.
Description
Cold stress triggers fat reallocation from intestine to oocytes, which is regulated by mTORC2/SGK-1 and PQM-1. To understand the underlying mechanism, animals are cold stressed at adult day 1 and collected for RNA-seq analysis.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE337nnn/GSE337660 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE337660 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1490541 ncbi.nlm.nih.gov/bioproject/PRJNA1490541 ↗
project · from NCBI GEO
Topics
- Stated by source
- Caenorhabditis elegans · Non-coding RNA profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE337660 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:non-coding-rna-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:6239 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |