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Table · dataset · 2026

<p>Oligonucleotide primers used in this study.</p>

Listed in figshare and Loughborough Research Repository — shown once because both records carry DOI 10.1371/journal.ppat.1014617.s008

<div><p>African swine fever virus (ASFV), a large double-stranded DNA virus, poses one of the most significant infectious disease threats to the global swine industry.

Description

ASFV transcription is particularly complex because of its unique host-independent transcription system. Using nanopore sequencing technology, we accurately identified the viral transcription start and termination sites.

Combining direct RNA sequencing with experimental verification strongly supports the presence of long multicistronic RNAs. By combining this information with the viral genome annotation, we identified six novel transcriptional genes with potential functions. Furthermore, we observed transcriptional “read-through” events, in which transcription initiated at a common start site continues beyond typical termination sites, producing multiple RNA transcripts of different lengths.

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Additionally, via direct RNA nanopore sequencing, we identified m6A and m5C methylation modifications on viral transcripts, which are predominantly distributed at both termini of the viral genome. Compared to unmodified transcripts, modified RNAs have shorter poly(A) tails, indicating a correlation between RNA modification and poly(A) tail length. Further investigation of ASFV transcriptional architecture, “read-through” events, RNA modifications, and candidate genes may improve our understanding of the viral life cycle and pathogenicity and inform the identification of potential antiviral targets.</p></div>

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Where it is published

Catalogue records · 1

Topics

Inferred from text
Disease 75% · RNA sequencing 75% · Sequencing 75%

Related

Provenance · 2 source records, 47 field assertions
SourceKeyLast seenRaw
figshareoai:figshare.com:article/339767869 d agoJSON v1
Loughborough Research Repositoryoai:figshare.com:article/339767869 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · figshare comconnector:figshare_com@1.0.0
concepts[disease].local:disease:cancermapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Cancer']
concepts[disease].local:disease:cancermapping · figshare comvocabulary-mapper@1.0.0keywords['Cancer']
concepts[disease].local:disease:diseaseenrichment · figshare comkeyword-concept-rules@1.0.0title+description (75%)
concepts[field].anzsrc:field:310706mapping · figshare comvocabulary-mapper@1.0.0keywords['Virology']
concepts[field].anzsrc:field:310706mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Virology']
concepts[field].anzsrc:field:320211mapping · figshare comvocabulary-mapper@1.0.0keywords['Infectious Diseases']
concepts[field].anzsrc:field:320211mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Infectious Diseases']
concepts[field].anzsrc:group:3102mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Computational Biology']
concepts[field].anzsrc:group:3102mapping · figshare comvocabulary-mapper@1.0.0keywords['Computational Biology']
concepts[field].anzsrc:group:3105mapping · figshare comvocabulary-mapper@1.0.0keywords['Genetics']
concepts[field].anzsrc:group:3105mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Genetics']
concepts[field].anzsrc:group:3107mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Microbiology']
concepts[field].anzsrc:group:3107mapping · figshare comvocabulary-mapper@1.0.0keywords['Microbiology']
concepts[field].anzsrc:group:3108mapping · figshare comvocabulary-mapper@1.0.0keywords['Plant Biology']
concepts[field].anzsrc:group:3108mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Plant Biology']
concepts[field].anzsrc:group:3204mapping · figshare comvocabulary-mapper@1.0.0keywords['Immunology']
concepts[field].anzsrc:group:3204mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Immunology']
concepts[field].local:field:astronomymapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:chemistrymapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:chemistrymapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:computer-science-aimapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:computer-science-aimapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:earth-environmentalmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:earth-environmentalmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:economics-financemapping · figshare comconnector:figshare_com@1.0.0
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concepts[field].local:field:life-sciencesmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:life-sciencesmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
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concepts[field].local:field:mathematics-statisticsmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:medicine-healthmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:medicine-healthmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:ocean-atmosphericmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:psychology-behavioralmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:social-sciencemapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:social-sciencemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[modality].local:modality:rna-seqenrichment · figshare comkeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:sequencingenrichment · figshare comkeyword-concept-rules@1.0.0title+description (75%)
descriptionsource · figshare comconnector:figshare_com@1.0.0/metadata/dc/description
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titlesource · figshare comconnector:figshare_com@1.0.0/metadata/dc/title