Data · dataset · 2014
Three bacterial genomes run on R6 Oxford Nanopore MinIon Chemistry
Listed in DataCite
Three bacterial genomes pooled at equal DNA concentrations and run on R6 Oxford Nanopore Chemistry.
Description
Borellia burdorferi B31, Escherichia coli K12 and Streptomyces avermitilis MA 4680. Note that these have been run together as a pool with no barcoding.
The Oxford Nanopore reads are contained in the file ninthtranche_renamed.fastq. The remaining FASTA files are the corresponding reference genomes included for convenience. The Lambda Control DNA spike-in sequence is also included.
Read the rest (1 more)
Bioanalyser traces and materials and methods may be found in the attached file. Version 1.91 Meterichor basecaller using 2D option. S.avermitilis 1.8x coverage B.burgdorferi 18.1x coverage Lambda control spike-in 1,132x coverage E.coli 4,64kb 6702 14.2% 0.25x coverage Statistics for read lengths: Min read length: 5 Max read length: 98,366 Mean read length: 1998.91 Standard deviation of read length: 2942.24 Median read length: 1,040 Statistics for numbers of reads: Number of reads: 47,093 Non-aligned reads 18051 38% Aligned reads 29042 62% Number of reads >=1kb: 24,392 Statistics for bases in the reads: Number of bases in all reads: 94,134,729 Number of bases in reads >=1kb: 82,118,285 GC Content of reads: 47.21 % Organism Genome size Number of reads aligning Percentage of aligned reads Mean depth of coverage
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/Three_bacterial_genomes_run_on_R6_Oxford_Nano… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.1084343 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1084343 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1084343 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Computer and information sciences
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1084343 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |