Constarium
← Search

Data · dataset · 2026

Bacteria in Bulgarian wild mice and voles, as well as absent African swine fever virus

Listed in GBIF

This dataset contains occurrence records of bacterial isolates obtained from rectal samples of wild rodents (Apodemus flavicollis or yellow-necked mouse and Myodes glareolus or bank vole) collected in Bulgaria.

Description

Animals were trapped and sampled in the field; rectal material was suspended in nutrient medium and subsequently processed in the Department of Infectious Microbiology of the Stephan Angeloff Institute of Microbiology, Bulgarian Academy of Sciences (SAIM-BAS), where bacterial isolates were cultured, purified, and identified using biochemical methods or PCR.

The isolates identified via BD PhoenixTM gave a confidence value of 99%, unless otherwise specified in parenthesis. Each record represents a bacterial isolate derived from a specific host individual at a defined place and time. Isolates are maintained as live cryopreserved pure cultures in the SAIM-BAS collection.

Read the rest (3 more)

Isolate identifiers follow the format SAIM-BAS-YI-[Roman numeral]-[Arabic numeral], where the Roman numeral denotes the host individual and the Arabic numeral denotes the isolate number corresponding to a table in the associated publication. These identifiers are provided in the organismID field and uniquely link GBIF records to the physical strains in the collection. The field eventID represents individual host animals.

All bacterial isolates derived from the same host share the same eventID, allowing linkage of multiple isolates to a single sampled individual. The presence of bacteria is confirmed from cultured material and reflects host-associated occurrence; records do not represent environmental prevalence. Host animals showed no clinical signs at the time of sampling; isolates are therefore considered likely commensal.

Multiple isolates of the same species per host may be present. In addition, the host rodents were tested for African swine fever virus, but it was not detected using PCR.

Links

Topics

From keywords
Life Sciences
Inferred from text
Tabular 65%
Provenance · 1 source records, 10 field assertions
SourceKeyLast seenRaw
GBIF291ede6f-af9e-4fe1-8118-820c270943886 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · gbifconnector:gbif@1.0.0
concepts[field].local:field:life-sciencesmapping · gbifconnector:gbif@1.0.0
concepts[modality].local:modality:tabularenrichment · gbifkeyword-concept-rules@1.0.0title+description (65%)
created_datesource · gbifconnector:gbif@1.0.0
descriptionsource · gbifconnector:gbif@1.0.0/description
licensesource · gbifconnector:gbif@1.0.0
publication_datesource · gbifconnector:gbif@1.0.0
spatialsource · gbifconnector:gbif@1.0.0
titlesource · gbifconnector:gbif@1.0.0/title
updated_datesource · gbifconnector:gbif@1.0.0