Data · dataset · 2024
SeqLengthPlot assessment on the de novo paired-end transcriptome assembly of Savalia savaglia
Listed in Teesside University Research Data Repository
This dataset contains the output folder compiled by SeqLengthPlot assessed on the de novo paired-end transcriptome assembly of the false black coral Savalia savaglia.
Description
The folder seq_length_Assembly_Ss_PE.Trinity contains: • seq_above199bp.fasta: Retrieved FASTA file containing transcripts with lengths of 200 bp and above, after splitting of the input FASTA file. • seq_below200bp.fasta: Retrieved FASTA file containing transcripts with lengths below 200 bp, after splitting of the input FASTA file. • seq_length_distribution_above99bp.png: PNG image file showing a histogram of transcripts with lengths of 200 bp and above on a linear scale. • seq_length_distribution_above199_log.png: PNG image file showing a histogram of transcripts with lengths of 200 bp and above on a logarithmic scale. • seq_length_distribution_below200bp.png: PNG image file showing a histogram of transcripts with lengths below 200 bp on a linear scale. • seq_length_distribution_below200_log.png: PNG image file showing a histogram of transcripts with lengths below 200 bp on a logarithmic scale. • seq_length_stats_by_threshold_200.txt: Text file containing detailed statistics of the transcripts lengths in the input FASTA file, including the total number of sequences, the number of sequences 200 bp and above, the number of sequences below 200 bp, and the corresponding minimum and maximum lengths.
Links
Where it is published
- DOI doi.org/10.17632/ngxzc3dcfp.3 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science · Life Sciences · Sequence analysis
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/ngxzc3dcfp.3 | 16 h ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].anzsrc:field:310206 | mapping · researchdata tees ac uk | vocabulary-mapper@1.0.0 | keywords['Sequence Analysis'] |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[modality].local:modality:image | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:text | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |