Data · dataset · 2015
BAGA genome analysis pipeline for recombination
Listed in DataCite
Script to run a comparative genomics analysis pipeline using the Bacterial and Archaeal Genome Analyser.
Description
This analysis infers homologous recombination rates in two sets of samples of Pseudomonas aeruginosa from cystic fibrosis chromic airway infection sputum samples. This script succesfully completed on a Debian Linux computer with 12GB memory and 100sGB disk space.
If you have trouble using baga raise an issue at github.com/daveuu/baga or email: david.williams@liverpool.ac.uk. The VCFs and multiple sequence alignments produced are available at DOIs: 10.6084/m9.figshare.1521307 and 10.6084/m9.figshare.1521131
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/BAGA_genome_analysis_pipeline_for_recombinati… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.1521159 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1521159 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1521159 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Biological sciences · Computer and information sciences · Health sciences
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1521159 | 14 d ago | JSON v1 |
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|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:health-sciences | source · DataCite | connector:datacite@1.0.0 | |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
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| updated_date | source · DataCite | connector:datacite@1.0.0 |