Omics · study · 2026
Apple Gala spore’s DNA methylation profiles contribution of genotype and environment distinction
Listed in NCBI GEO
We were interested in the contribution of DNA methylation and in particular Differentially Methylated Region (DRM) to distinguish or in contrary find a common methylated profile between Gala apple sports and/or different orchard localization.
Description
To answer theses scientific issue, we explored several questions (1) Are there common and specific Differentially Methylated Regions (DMRs) for all six Gala mutantsports at a unique site?
(2) Are there common and specific DMRs across all sites for each mutantsport? (3) Are these site-specific DMRs for each variety sustainable over years?
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE308nnn/GSE308628 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE308628 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1331791 ncbi.nlm.nih.gov/bioproject/PRJNA1331791 ↗
project · from NCBI GEO
Topics
- Stated by source
- Methylation profiling by high throughput sequencing
- From keywords
- Life Sciences
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE308628 | 7 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:methylation-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |