Data · dataset · 2023
Combinatorial RiPP biosynthesis for the generation of gene-encoded new-to-nature peptide antimicrobials
Listed in IISH Dataverse
This dataset contains the additional supplementary data belonging to the PhD thesis of Fleur Ruijne titled 'Combinatorial RiPP biosynthesis for the generation of gene-encoded new-to-nature peptide antimicrobials'.
Description
In this thesis we constructed several new biosynthetic pathways, combining RiPP post-translational modification enzymes to act on a single peptide to synthesize new-to-nature antimicrobial peptides that mimic several potent non-ribosomal peptide antibiotics.
These files contains data belonging to the three experimental chapters of the thesis and include mass spectrometry figures, LC-MS analysis figures, precursor peptide sequences, primer sequences and the supplementary information references.
Links
Where it is published
- Dataverse dataset page dataverse.nl/dataset.xhtml?persistentId=doi%3A10.34894%2FV5O7UE ↗
landing page · from datasets iisg amsterdam
- DOI doi.org/10.34894/v5o7ue ↗
DOI / persistent id · from datasets iisg amsterdam
Catalogue records · 1
- Dataverse API dataverse.nl/api/datasets/:persistentId/?persistentId=doi%3A10.34894%2FV5O7… ↗
metadata API · from datasets iisg amsterdam
Topics
- Stated by source
- Chemistry · Medicine, Health and Life Sciences
- From keywords
- Chemistry · Life Sciences · Medicine & Health · Synthetic biology
- Inferred from text
- Mass spectrometry 75%
Provenance · 1 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| IISH Dataverse | doi:10.34894/V5O7UE | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:field:310113 | mapping · datasets iisg amsterdam | vocabulary-mapper@1.0.0 | keywords['Synthetic biology'] |
| concepts[field].dataverse_subject:chemistry | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].dataverse_subject:medicine-health-and-life-sciences | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].local:field:chemistry | mapping · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[modality].local:modality:mass-spectrometry | enrichment · datasets iisg amsterdam | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| description | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /description |
| publication_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| title | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /name |
| updated_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| version_label | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 |