Data · dataset · 2018
Replication data for: Multilevel Agrobiodiversity and Conservation of Andean Potatoes in Central Peru
Listed in International Potato Center
A population consisting of 989 samples belonging to 8 farmer households (ISC-01 to ISC-08) was characterized using 18 polymorphic single sequence repeat (SSR; microsatellite) markers covering the whole genome (Ghislain et al 2004).
Description
Standard procedures, including DNA extraction with DNeasy 96 plant kits, high-throughput genotyping with a LI-COR 4300 DNA Analysis System,and SSR allele scoring with SAGA Generation 2 software (LI-COR), were applied.
Standardized dissimilarity analysis for ISC-01 to ISC-08 and the regional population were conducted using the Jaccard coefficient and UPGMA clustering method with NTSYS-pc 2.1 software. Dissimilarity trees (dendrograms) were built with the same data using an unweighted neighbor joining clustering method for a dissimilarity matrix calculated with the Jaccard coefficient using DARwin 4.0 and NTSYS-pc 2.1 software.
Links
Where it is published
- Dataverse dataset page data.cipotato.org/dataset.xhtml?persistentId=doi%3A10.21223%2FP3%2F681TF7 ↗
landing page · from data cipotato org
- DOI doi.org/10.21223/p3/681tf7 ↗
DOI / persistent id · from data cipotato org
Catalogue records · 1
- Dataverse API data.cipotato.org/api/datasets/:persistentId/?persistentId=doi%3A10.21223%2FP3%2… ↗
metadata API · from data cipotato org
Topics
- Stated by source
- Agricultural Sciences
- From keywords
- Life Sciences
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| International Potato Center | doi:10.21223/P3/681TF7 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].dataverse_subject:agricultural-sciences | source · data cipotato org | connector:data_cipotato_org@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · data cipotato org | connector:data_cipotato_org@1.0.0 | /subjects |
| created_date | source · data cipotato org | connector:data_cipotato_org@1.0.0 | |
| description | source · data cipotato org | connector:data_cipotato_org@1.0.0 | /description |
| publication_date | source · data cipotato org | connector:data_cipotato_org@1.0.0 | |
| title | source · data cipotato org | connector:data_cipotato_org@1.0.0 | /name |
| updated_date | source · data cipotato org | connector:data_cipotato_org@1.0.0 | |
| version_label | source · data cipotato org | connector:data_cipotato_org@1.0.0 |