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Data · dataset · 2019

Data for: Contrasting patterns of diversification between Amazonian and Atlantic forest clades of Neotropical lianas (Amphilophium, Bignonieae) inferred from plastid genomic data

Listed in Teesside University Research Data Repository

File: "run_Amphilophium_nowide_simplex-nodist-epoch.Rev" RevBayes script.

Description

Runs an epoch model with distance_rate equal to 1 (not scaled); cladogenetic event probabilities are set as a flat prior simplex (probabilities sum to 1) and the relative probabilities of the different events are equal: simplex(1,1). THIS IS THE EQUIVALENT TO DEC stratified (M1) used in the paper.

File: “times.txt” file. input for stratified model (M1) in RevBaye script. It sets the ages for the time slices (29 Ma to 13 Ma, 13 Ma to 0 Ma in the paper). Files: "amp.connectivity.1.txt" and "amp.connectivity.2.txt" input for stratified model (M1) in RevBaye script.Probability matrices for each epoch (1= 29 Ma to 13 Ma, 2 =13 Ma to 0 Ma).

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Where it is published

Catalogue records · 1

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Inferred from text
Genome sequencing 65%
Provenance · 1 source records, 7 field assertions
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Teesside University Research Data Repositoryoai:data.mendeley.com/j8fvtp4bhr.16 h agoJSON v1
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concepts[field].local:field:earth-environmentalmapping · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0
concepts[modality].local:modality:genome-sequencingenrichment · researchdata tees ac ukkeyword-concept-rules@1.0.0title+description (65%)
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