Data · dataset · 2019
Data for: Contrasting patterns of diversification between Amazonian and Atlantic forest clades of Neotropical lianas (Amphilophium, Bignonieae) inferred from plastid genomic data
Listed in Teesside University Research Data Repository
File: "run_Amphilophium_nowide_simplex-nodist-epoch.Rev" RevBayes script.
Description
Runs an epoch model with distance_rate equal to 1 (not scaled); cladogenetic event probabilities are set as a flat prior simplex (probabilities sum to 1) and the relative probabilities of the different events are equal: simplex(1,1). THIS IS THE EQUIVALENT TO DEC stratified (M1) used in the paper.
File: “times.txt” file. input for stratified model (M1) in RevBaye script. It sets the ages for the time slices (29 Ma to 13 Ma, 13 Ma to 0 Ma in the paper). Files: "amp.connectivity.1.txt" and "amp.connectivity.2.txt" input for stratified model (M1) in RevBaye script.Probability matrices for each epoch (1= 29 Ma to 13 Ma, 2 =13 Ma to 0 Ma).
Links
Where it is published
- DOI doi.org/10.17632/j8fvtp4bhr.1 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science
- Inferred from text
- Genome sequencing 65%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/j8fvtp4bhr.1 | 6 h ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[modality].local:modality:genome-sequencing | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |