Repeated detection-nondetection data of corticolous lichens from a standardised monitoring across Switzerland

The downloadable `.zip` folder has the following structure:

• `0_data/`
• `1_code/`
• `2_output/`
• `lichen_detectability.Rproj`
• `README.txt`
• `workflow.html` - `workflow.Rmd` The main folder and the three subordinate folders each have their own `README*.txt` file. These describe each available file in detail and should be consulted prior to using the data or running any code. The file `lichen_detectability.Rproj` stores the information about the R project. The user can open the project by clicking/double-clicking on this file which will automatically define the repository as working directory for the R session. If the user does not use RStudio/Posit, they may have to set the working directory manually to the stored location in the R files. The files `workflow.*` guide the user through the analysis (`1_code/*.R`) in the correct order so that they can: - bundle the cleaned data into a data list readable for JAGS - fit the multi-species occupancy model to the data and store the output - assess the goodness-of-fit of the model to the data - conduct a prior sensitivity analysis with 2 additional sets of priors - extract the summary statistics reported in the manuscript and supplementary materials - generate the figures shown in the manuscript and supplementary materials