Data · dataset · 2026
FindMe re-analysed nanopore sequencing samples HG002, HG003, HG004, HG007 (R10.4.1 5 kHz, Dorado 0.9.1 sup@v5.0.0)
Listed in ScienceDB
This dataset contains coordinate-sorted BAM files produced by re-basecalling the public Oxford Nanopore Technologies (ONT) R10.4.1 5 kHz raw signal for HG002, HG003, HG004, HG007.
Description
The raw signal originates from s3://ont-open-data/giab_2025.01/flowcells/HG002/; s3://ont-open-data/giab_2025.01/flowcells/HG003/; s3://ont-open-data/giab_2025.01/flowcells/HG004/; s3://ont-open-data/giab_2025.01/flowcells/HG007/. Dorado 0.9.1 was run with the basecalling model sup@v5.0.0 and its corresponding 5mCG/5hmCG modified-base model; the files carry MM/ML modified-base tags.
Reads were aligned to the GRCh38 reference and then filtered with `samtools view -h -b -F 4079`, coordinate sorted with `samtools sort` and indexed. Each BAM is named after the sample, basecaller, version, model and processing mode. The data are intended for downstream evaluation of FindMe and as reusable basecalled nanopore whole-genome sequencing data.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.010fk ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Bioinformatics and computational biology 75% · Genome sequencing 65% · Sequencing 75%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.010fk | 8 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3102 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (75%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:genome-sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license_text | source · scidb cn | connector:scidb_cn@1.0.0 | |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |