Table · dataset · 2026
<b>Transmission-Blocking Antimalarial Discovery: Integrative In Silico Screening of Indonesian Medicinal Plant Compounds Targeting </b><b><i>Plasmodium falciparum</i></b><b> CPDK2</b>
Listed in HKU DataHub and figshare and Loughborough Research Repository — shown once because both records carry DOI 10.6084/m9.figshare.34003740.v1
<p dir="ltr">Complete dataset supporting an in silico screen of 21,000 natural product compounds from Indonesian medicinal plants against <i>Plasmodium falciparum</i> calcium-dependent protein kinase 2 (<i>Pf</i>CDPK2, PDB ID 4MVF), a transmission-blocking antimalarial target.
Description
All files needed to reproduce the reported analyses are included.</p><p dir="ltr">Contents: molecular docking outputs and re-docking validation of the co-crystallized staurosporine control; drug-likeness and pkCSM ADMET predictions; PerMM membrane permeation free energy profiles; 100 ns GROMACS molecular dynamics trajectory analyses (RMSD, RMSF, radius of gyration, hydrogen bonds, SASA); MM/GBSA binding free energies; Gibbs free energy landscapes; PCA and DCCM outputs; and network pharmacology target and enrichment results.</p><p dir="ltr">Compounds analysed: CID 3035728 (<i>Isatis indigotica</i>), CID 13889675 (<i>Physalis minima</i>), CID 14236711 (<i>Lycium chinense</i>), CID 44425456 (<i>Datura metel</i>), and CID 71745004 (<i>Argemone mexicana</i>), with staurosporine (control).</p><p dir="ltr">Software: AutoDock Vina 1.2.3, Open Babel, pkCSM, PerMM, CHARMM-GUI, GROMACS, gmx_MMPBSA, Bio3D, STRING, Cytoscape, Metascape.</p>
Links
Where it is published
- DOI doi.org/10.6084/m9.figshare.34003740.v1 ↗
DOI / persistent id · from datahub hku hk
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from datahub hku hk
Topics
- From keywords
- Astronomy & Astrophysics · Bioinformatic methods development · Bioinformatic methods development · Bioinformatic methods development · Chemistry · Chemistry · Chemistry · Computer Science & AI · Computer Science & AI · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Economics & Finance · Economics & Finance · Engineering · Engineering · Humanities · Humanities · Life Sciences · Life Sciences · Life Sciences · Materials Science · Mathematics & Statistics · Medicine & Health · Medicine & Health · Ocean & Atmospheric Science · Psychology & Behavioral Science · Social Science · Social Science · Translational and applied bioinformatics · Translational and applied bioinformatics · Translational and applied bioinformatics
Provenance · 3 source records, 37 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| HKU DataHub | oai:figshare.com:article/34003740 | 6 d ago | JSON v1 |
| figshare | oai:figshare.com:article/34003740 | 5 d ago | JSON v1 |
| Loughborough Research Repository | oai:figshare.com:article/34003740 | 5 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].anzsrc:field:310201 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Bioinformatic methods development'] |
| concepts[field].anzsrc:field:310201 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Bioinformatic methods development'] |
| concepts[field].anzsrc:field:310201 | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['Bioinformatic methods development'] |
| concepts[field].anzsrc:field:310208 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Translational and applied bioinformatics'] |
| concepts[field].anzsrc:field:310208 | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['Translational and applied bioinformatics'] |
| concepts[field].anzsrc:field:310208 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Translational and applied bioinformatics'] |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:materials-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:mathematics-statistics | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:psychology-behavioral | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:social-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| description | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | /metadata/dc/description |
| license | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | /metadata/dc/rights |
| publication_date | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| title | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | /metadata/dc/title |