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Table · dataset · 2026

<b>Transmission-Blocking Antimalarial Discovery: Integrative In Silico Screening of Indonesian Medicinal Plant Compounds Targeting </b><b><i>Plasmodium falciparum</i></b><b> CPDK2</b>

Listed in HKU DataHub and figshare and Loughborough Research Repository — shown once because both records carry DOI 10.6084/m9.figshare.34003740.v1

<p dir="ltr">Complete dataset supporting an in silico screen of 21,000 natural product compounds from Indonesian medicinal plants against <i>Plasmodium falciparum</i> calcium-dependent protein kinase 2 (<i>Pf</i>CDPK2, PDB ID 4MVF), a transmission-blocking antimalarial target.

Description

All files needed to reproduce the reported analyses are included.</p><p dir="ltr">Contents: molecular docking outputs and re-docking validation of the co-crystallized staurosporine control; drug-likeness and pkCSM ADMET predictions; PerMM membrane permeation free energy profiles; 100 ns GROMACS molecular dynamics trajectory analyses (RMSD, RMSF, radius of gyration, hydrogen bonds, SASA); MM/GBSA binding free energies; Gibbs free energy landscapes; PCA and DCCM outputs; and network pharmacology target and enrichment results.</p><p dir="ltr">Compounds analysed: CID 3035728 (<i>Isatis indigotica</i>), CID 13889675 (<i>Physalis minima</i>), CID 14236711 (<i>Lycium chinense</i>), CID 44425456 (<i>Datura metel</i>), and CID 71745004 (<i>Argemone mexicana</i>), with staurosporine (control).</p><p dir="ltr">Software: AutoDock Vina 1.2.3, Open Babel, pkCSM, PerMM, CHARMM-GUI, GROMACS, gmx_MMPBSA, Bio3D, STRING, Cytoscape, Metascape.</p>

Links

Where it is published

Catalogue records · 1

Topics

Provenance · 3 source records, 37 field assertions
SourceKeyLast seenRaw
HKU DataHuboai:figshare.com:article/340037406 d agoJSON v1
figshareoai:figshare.com:article/340037405 d agoJSON v1
Loughborough Research Repositoryoai:figshare.com:article/340037405 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · datahub hku hkconnector:datahub_hku_hk@1.0.0
concepts[field].anzsrc:field:310201mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Bioinformatic methods development']
concepts[field].anzsrc:field:310201mapping · figshare comvocabulary-mapper@1.0.0keywords['Bioinformatic methods development']
concepts[field].anzsrc:field:310201mapping · datahub hku hkvocabulary-mapper@1.0.0keywords['Bioinformatic methods development']
concepts[field].anzsrc:field:310208mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Translational and applied bioinformatics']
concepts[field].anzsrc:field:310208mapping · datahub hku hkvocabulary-mapper@1.0.0keywords['Translational and applied bioinformatics']
concepts[field].anzsrc:field:310208mapping · figshare comvocabulary-mapper@1.0.0keywords['Translational and applied bioinformatics']
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concepts[field].local:field:chemistrymapping · figshare comconnector:figshare_com@1.0.0
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concepts[field].local:field:computer-science-aimapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:earth-environmentalmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:earth-environmentalmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:earth-environmentalmapping · datahub hku hkconnector:datahub_hku_hk@1.0.0
concepts[field].local:field:economics-financemapping · figshare comconnector:figshare_com@1.0.0
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concepts[field].local:field:life-sciencesmapping · figshare comconnector:figshare_com@1.0.0
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concepts[field].local:field:medicine-healthmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:medicine-healthmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:ocean-atmosphericmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:psychology-behavioralmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
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